Motif | MNX1.H12CORE.0.SM.B |
Gene (human) | MNX1 (GeneCards) |
Gene synonyms (human) | HLXB9 |
Gene (mouse) | Mnx1 |
Gene synonyms (mouse) | Hlxb9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | MNX1.H12CORE.0.SM.B |
Gene (human) | MNX1 (GeneCards) |
Gene synonyms (human) | HLXB9 |
Gene (mouse) | Mnx1 |
Gene synonyms (mouse) | Hlxb9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | nvvYTAATTAbn |
GC content | 34.39% |
Information content (bits; total / per base) | 11.903 / 0.992 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9170 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 3 experiments | median | 0.97 | 0.953 | 0.948 | 0.923 | 0.887 | 0.866 |
best | 0.975 | 0.96 | 0.954 | 0.932 | 0.9 | 0.871 | |
Methyl HT-SELEX, 1 experiments | median | 0.975 | 0.96 | 0.954 | 0.932 | 0.887 | 0.866 |
best | 0.975 | 0.96 | 0.954 | 0.932 | 0.887 | 0.866 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.754 | 0.739 | 0.734 | 0.719 | 0.705 | 0.69 |
best | 0.97 | 0.953 | 0.948 | 0.923 | 0.9 | 0.871 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 2 | 0.742 | 0.163 | 0.762 | 0.523 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | MNX {3.1.1.13} (TFClass) |
TFClass ID | TFClass: 3.1.1.13.1 |
HGNC | HGNC:4979 |
MGI | MGI:109160 |
EntrezGene (human) | GeneID:3110 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | MNX1_HUMAN |
UniProt ID (mouse) | MNX1_MOUSE |
UniProt AC (human) | P50219 (TFClass) |
UniProt AC (mouse) | Q9QZW9 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 1 |
PCM | MNX1.H12CORE.0.SM.B.pcm |
PWM | MNX1.H12CORE.0.SM.B.pwm |
PFM | MNX1.H12CORE.0.SM.B.pfm |
Alignment | MNX1.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | MNX1.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | MNX1.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | MNX1.H12CORE.0.SM.B_meme_format.meme |
Transfac format | MNX1.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2500.5 | 2253.5 | 2349.5 | 2066.5 |
02 | 1834.25 | 3984.25 | 1837.25 | 1514.25 |
03 | 2711.0 | 2188.0 | 3885.0 | 386.0 |
04 | 521.0 | 5113.0 | 969.0 | 2567.0 |
05 | 0.0 | 0.0 | 0.0 | 9170.0 |
06 | 9170.0 | 0.0 | 0.0 | 0.0 |
07 | 9170.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 9170.0 |
09 | 1.0 | 179.0 | 327.0 | 8663.0 |
10 | 6694.0 | 21.0 | 2397.0 | 58.0 |
11 | 801.5 | 4823.5 | 2336.5 | 1208.5 |
12 | 1721.25 | 2769.25 | 2405.25 | 2274.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.273 | 0.246 | 0.256 | 0.225 |
02 | 0.2 | 0.434 | 0.2 | 0.165 |
03 | 0.296 | 0.239 | 0.424 | 0.042 |
04 | 0.057 | 0.558 | 0.106 | 0.28 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.02 | 0.036 | 0.945 |
10 | 0.73 | 0.002 | 0.261 | 0.006 |
11 | 0.087 | 0.526 | 0.255 | 0.132 |
12 | 0.188 | 0.302 | 0.262 | 0.248 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.087 | -0.017 | 0.025 | -0.104 |
02 | -0.223 | 0.552 | -0.221 | -0.414 |
03 | 0.168 | -0.047 | 0.527 | -1.777 |
04 | -1.478 | 0.802 | -0.86 | 0.113 |
05 | -6.914 | -6.914 | -6.914 | 1.386 |
06 | 1.386 | -6.914 | -6.914 | -6.914 |
07 | 1.386 | -6.914 | -6.914 | -6.914 |
08 | -6.914 | -6.914 | -6.914 | 1.386 |
09 | -6.55 | -2.538 | -1.941 | 1.329 |
10 | 1.071 | -4.591 | 0.045 | -3.639 |
11 | -1.049 | 0.743 | 0.019 | -0.639 |
12 | -0.286 | 0.189 | 0.048 | -0.008 |
P-value | Threshold |
---|---|
0.001 | 3.20136 |
0.0005 | 4.98547 |
0.0001 | 7.799305 |