| Motif | MITF.H12RSNP.0.P.B |
| Gene (human) | MITF (GeneCards) |
| Gene synonyms (human) | BHLHE32 |
| Gene (mouse) | Mitf |
| Gene synonyms (mouse) | Bw, Mi, Vit |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | MITF.H12RSNP.0.P.B |
| Gene (human) | MITF (GeneCards) |
| Gene synonyms (human) | BHLHE32 |
| Gene (mouse) | Mitf |
| Gene synonyms (mouse) | Bw, Mi, Vit |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | RTCACGTGACY |
| GC content | 54.63% |
| Information content (bits; total / per base) | 17.778 / 1.616 |
| Data sources | ChIP-Seq |
| Aligned words | 929 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 10 (58) | 0.805 | 0.997 | 0.732 | 0.992 | 0.802 | 0.998 | 3.366 | 8.337 | 154.891 | 1155.215 |
| Mouse | 1 (5) | 0.744 | 0.756 | 0.649 | 0.666 | 0.73 | 0.737 | 2.195 | 2.279 | 125.638 | 136.602 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 25.283 | 14.573 | 0.351 | 0.268 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | bHLH-ZIP {1.2.6} (TFClass) |
| TF subfamily | TFE3 {1.2.6.1} (TFClass) |
| TFClass ID | TFClass: 1.2.6.1.4 |
| HGNC | HGNC:7105 |
| MGI | MGI:104554 |
| EntrezGene (human) | GeneID:4286 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17342 (SSTAR profile) |
| UniProt ID (human) | MITF_HUMAN |
| UniProt ID (mouse) | MITF_MOUSE |
| UniProt AC (human) | O75030 (TFClass) |
| UniProt AC (mouse) | Q08874 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 10 human, 1 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | MITF.H12RSNP.0.P.B.pcm |
| PWM | MITF.H12RSNP.0.P.B.pwm |
| PFM | MITF.H12RSNP.0.P.B.pfm |
| Alignment | MITF.H12RSNP.0.P.B.words.tsv |
| Threshold to P-value map | MITF.H12RSNP.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | MITF.H12RSNP.0.P.B_jaspar_format.txt |
| MEME format | MITF.H12RSNP.0.P.B_meme_format.meme |
| Transfac format | MITF.H12RSNP.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 450.0 | 77.0 | 401.0 | 1.0 |
| 02 | 5.0 | 42.0 | 19.0 | 863.0 |
| 03 | 0.0 | 929.0 | 0.0 | 0.0 |
| 04 | 928.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 925.0 | 1.0 | 3.0 |
| 06 | 45.0 | 1.0 | 883.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 929.0 |
| 08 | 0.0 | 0.0 | 929.0 | 0.0 |
| 09 | 926.0 | 0.0 | 0.0 | 3.0 |
| 10 | 0.0 | 830.0 | 1.0 | 98.0 |
| 11 | 124.0 | 511.0 | 34.0 | 260.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.484 | 0.083 | 0.432 | 0.001 |
| 02 | 0.005 | 0.045 | 0.02 | 0.929 |
| 03 | 0.0 | 1.0 | 0.0 | 0.0 |
| 04 | 0.999 | 0.0 | 0.0 | 0.001 |
| 05 | 0.0 | 0.996 | 0.001 | 0.003 |
| 06 | 0.048 | 0.001 | 0.95 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1.0 |
| 08 | 0.0 | 0.0 | 1.0 | 0.0 |
| 09 | 0.997 | 0.0 | 0.0 | 0.003 |
| 10 | 0.0 | 0.893 | 0.001 | 0.105 |
| 11 | 0.133 | 0.55 | 0.037 | 0.28 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.658 | -1.089 | 0.543 | -4.459 |
| 02 | -3.552 | -1.678 | -2.425 | 1.307 |
| 03 | -4.92 | 1.381 | -4.92 | -4.92 |
| 04 | 1.38 | -4.92 | -4.92 | -4.459 |
| 05 | -4.92 | 1.376 | -4.459 | -3.906 |
| 06 | -1.611 | -4.459 | 1.33 | -4.92 |
| 07 | -4.92 | -4.92 | -4.92 | 1.381 |
| 08 | -4.92 | -4.92 | 1.381 | -4.92 |
| 09 | 1.378 | -4.92 | -4.92 | -3.906 |
| 10 | -4.92 | 1.268 | -4.459 | -0.853 |
| 11 | -0.621 | 0.785 | -1.88 | 0.112 |
| P-value | Threshold |
|---|---|
| 0.001 | -0.49399 |
| 0.0005 | 1.15464 |
| 0.0001 | 4.69226 |