MotifMGAP.H12INVIVO.1.S.B
Gene (human)MGA
(GeneCards)
Gene synonyms (human)KIAA0518, MAD5
Gene (mouse)Mga
Gene synonyms (mouse)Kiaa4252
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length18
ConsensusnRSGTGTGAWWWYYMvSR
GC content45.84%
Information content (bits; total / per base)18.418 / 1.023
Data sourcesHT-SELEX
Aligned words883

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.55 0.558 0.361 0.371 0.54 0.587 1.174 1.292 0 0.06

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.867 0.873 0.72 0.738 0.613 0.642
best 0.997 0.997 0.827 0.845 0.668 0.708
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familybHLH-ZIP {1.2.6} (TFClass)
TF subfamilyMAD {1.2.6.7} (TFClass)
TFClass IDTFClass: 1.2.6.7.4
HGNCHGNC:14010
MGIMGI:1352483
EntrezGene (human)GeneID:23269
(SSTAR profile)
EntrezGene (mouse)GeneID:29808
(SSTAR profile)
UniProt ID (human)MGAP_HUMAN
UniProt ID (mouse)MGAP_MOUSE
UniProt AC (human)Q8IWI9
(TFClass)
UniProt AC (mouse)A2AWL7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01248.5170.5268.5195.5
02591.7555.75168.7566.75
0371.086.0687.039.0
044.08.0866.05.0
050.043.00.0840.0
060.00.0883.00.0
078.030.03.0842.0
087.03.0852.021.0
09866.02.011.04.0
10683.035.051.0114.0
11437.055.055.0336.0
12148.054.047.0634.0
1398.0122.052.0611.0
1474.0130.036.0643.0
15141.0601.081.060.0
16450.0116.0227.090.0
1737.75694.75111.7538.75
18147.071.0609.056.0
PFM
ACGT
010.2810.1930.3040.221
020.670.0630.1910.076
030.080.0970.7780.044
040.0050.0090.9810.006
050.00.0490.00.951
060.00.01.00.0
070.0090.0340.0030.954
080.0080.0030.9650.024
090.9810.0020.0120.005
100.7730.040.0580.129
110.4950.0620.0620.381
120.1680.0610.0530.718
130.1110.1380.0590.692
140.0840.1470.0410.728
150.160.6810.0920.068
160.510.1310.2570.102
170.0430.7870.1270.044
180.1660.080.690.063
PWM
ACGT
010.118-0.2560.194-0.12
020.981-1.354-0.266-1.179
03-1.118-0.9311.13-1.699
04-3.665-3.1331.361-3.503
05-4.877-1.605-4.8771.331
06-4.877-4.8771.381-4.877
07-3.133-1.948-3.8581.333
08-3.242-3.8581.345-2.283
091.361-4.097-2.863-3.665
101.124-1.802-1.44-0.654
110.679-1.367-1.3670.417
12-0.396-1.385-1.5191.05
13-0.803-0.587-1.4211.013
14-1.078-0.524-1.7751.064
15-0.4440.997-0.99-1.282
160.708-0.6370.028-0.886
17-1.731.141-0.673-1.705
18-0.403-1.1181.01-1.349
Standard thresholds
P-value Threshold
0.001 1.39696
0.0005 2.73621
0.0001 5.54766