| Motif | MESP2.H12INVIVO.0.S.D |
| Gene (human) | MESP2 (GeneCards) |
| Gene synonyms (human) | BHLHC6, SCDO2 |
| Gene (mouse) | Mesp2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MESP2.H12INVIVO.0.S.D |
| Gene (human) | MESP2 (GeneCards) |
| Gene synonyms (human) | BHLHC6, SCDO2 |
| Gene (mouse) | Mesp2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 14 |
| Consensus | ndbAMCATATGGYd |
| GC content | 44.96% |
| Information content (bits; total / per base) | 15.903 / 1.136 |
| Data sources | HT-SELEX |
| Aligned words | 1754 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.763 | 0.767 | 0.625 | 0.643 | 0.562 | 0.583 |
| best | 0.763 | 0.767 | 0.625 | 0.643 | 0.562 | 0.583 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | MESP {1.2.3.3} (TFClass) |
| TFClass ID | TFClass: 1.2.3.3.2 |
| HGNC | HGNC:29659 |
| MGI | MGI:1096325 |
| EntrezGene (human) | GeneID:145873 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17293 (SSTAR profile) |
| UniProt ID (human) | MESP2_HUMAN |
| UniProt ID (mouse) | MESP2_MOUSE |
| UniProt AC (human) | Q0VG99 (TFClass) |
| UniProt AC (mouse) | O08574 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | MESP2.H12INVIVO.0.S.D.pcm |
| PWM | MESP2.H12INVIVO.0.S.D.pwm |
| PFM | MESP2.H12INVIVO.0.S.D.pfm |
| Alignment | MESP2.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | MESP2.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | MESP2.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | MESP2.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | MESP2.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 438.0 | 277.0 | 552.0 | 487.0 |
| 02 | 399.25 | 241.25 | 842.25 | 271.25 |
| 03 | 156.0 | 946.0 | 336.0 | 316.0 |
| 04 | 1233.0 | 11.0 | 496.0 | 14.0 |
| 05 | 1202.0 | 444.0 | 105.0 | 3.0 |
| 06 | 2.0 | 1742.0 | 7.0 | 3.0 |
| 07 | 1751.0 | 0.0 | 3.0 | 0.0 |
| 08 | 84.0 | 1.0 | 5.0 | 1664.0 |
| 09 | 1738.0 | 0.0 | 11.0 | 5.0 |
| 10 | 2.0 | 0.0 | 1.0 | 1751.0 |
| 11 | 3.0 | 1.0 | 1750.0 | 0.0 |
| 12 | 13.0 | 9.0 | 1315.0 | 417.0 |
| 13 | 64.0 | 782.0 | 69.0 | 839.0 |
| 14 | 404.25 | 182.25 | 911.25 | 256.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.25 | 0.158 | 0.315 | 0.278 |
| 02 | 0.228 | 0.138 | 0.48 | 0.155 |
| 03 | 0.089 | 0.539 | 0.192 | 0.18 |
| 04 | 0.703 | 0.006 | 0.283 | 0.008 |
| 05 | 0.685 | 0.253 | 0.06 | 0.002 |
| 06 | 0.001 | 0.993 | 0.004 | 0.002 |
| 07 | 0.998 | 0.0 | 0.002 | 0.0 |
| 08 | 0.048 | 0.001 | 0.003 | 0.949 |
| 09 | 0.991 | 0.0 | 0.006 | 0.003 |
| 10 | 0.001 | 0.0 | 0.001 | 0.998 |
| 11 | 0.002 | 0.001 | 0.998 | 0.0 |
| 12 | 0.007 | 0.005 | 0.75 | 0.238 |
| 13 | 0.036 | 0.446 | 0.039 | 0.478 |
| 14 | 0.23 | 0.104 | 0.52 | 0.146 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.001 | -0.457 | 0.229 | 0.104 |
| 02 | -0.093 | -0.594 | 0.651 | -0.478 |
| 03 | -1.026 | 0.767 | -0.265 | -0.326 |
| 04 | 1.031 | -3.533 | 0.123 | -3.323 |
| 05 | 1.006 | 0.012 | -1.416 | -4.505 |
| 06 | -4.735 | 1.376 | -3.905 | -4.505 |
| 07 | 1.381 | -5.463 | -4.505 | -5.463 |
| 08 | -1.635 | -5.034 | -4.161 | 1.33 |
| 09 | 1.374 | -5.463 | -3.533 | -4.161 |
| 10 | -4.735 | -5.463 | -5.034 | 1.381 |
| 11 | -4.505 | -5.034 | 1.381 | -5.463 |
| 12 | -3.388 | -3.702 | 1.095 | -0.05 |
| 13 | -1.9 | 0.577 | -1.827 | 0.647 |
| 14 | -0.081 | -0.872 | 0.729 | -0.534 |
| P-value | Threshold |
|---|---|
| 0.001 | 1.05386 |
| 0.0005 | 2.67556 |
| 0.0001 | 5.76506 |