MotifMESP2.H12INVITRO.0.S.C
Gene (human)MESP2
(GeneCards)
Gene synonyms (human)BHLHC6, SCDO2
Gene (mouse)Mesp2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length14
ConsensusndbAMCATATGGYd
GC content44.96%
Information content (bits; total / per base)15.903 / 1.136
Data sourcesHT-SELEX
Aligned words1754

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.763 0.767 0.625 0.643 0.562 0.583
best 0.763 0.767 0.625 0.643 0.562 0.583
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyMESP {1.2.3.3} (TFClass)
TFClass IDTFClass: 1.2.3.3.2
HGNCHGNC:29659
MGIMGI:1096325
EntrezGene (human)GeneID:145873
(SSTAR profile)
EntrezGene (mouse)GeneID:17293
(SSTAR profile)
UniProt ID (human)MESP2_HUMAN
UniProt ID (mouse)MESP2_MOUSE
UniProt AC (human)Q0VG99
(TFClass)
UniProt AC (mouse)O08574
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01438.0277.0552.0487.0
02399.25241.25842.25271.25
03156.0946.0336.0316.0
041233.011.0496.014.0
051202.0444.0105.03.0
062.01742.07.03.0
071751.00.03.00.0
0884.01.05.01664.0
091738.00.011.05.0
102.00.01.01751.0
113.01.01750.00.0
1213.09.01315.0417.0
1364.0782.069.0839.0
14404.25182.25911.25256.25
PFM
ACGT
010.250.1580.3150.278
020.2280.1380.480.155
030.0890.5390.1920.18
040.7030.0060.2830.008
050.6850.2530.060.002
060.0010.9930.0040.002
070.9980.00.0020.0
080.0480.0010.0030.949
090.9910.00.0060.003
100.0010.00.0010.998
110.0020.0010.9980.0
120.0070.0050.750.238
130.0360.4460.0390.478
140.230.1040.520.146
PWM
ACGT
01-0.001-0.4570.2290.104
02-0.093-0.5940.651-0.478
03-1.0260.767-0.265-0.326
041.031-3.5330.123-3.323
051.0060.012-1.416-4.505
06-4.7351.376-3.905-4.505
071.381-5.463-4.505-5.463
08-1.635-5.034-4.1611.33
091.374-5.463-3.533-4.161
10-4.735-5.463-5.0341.381
11-4.505-5.0341.381-5.463
12-3.388-3.7021.095-0.05
13-1.90.577-1.8270.647
14-0.081-0.8720.729-0.534
Standard thresholds
P-value Threshold
0.001 1.05386
0.0005 2.67556
0.0001 5.76506