MESP2.H12INVITRO.0.S.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MESP2.H12INVITRO.0.S.C
Gene (human)	MESP2 (GeneCards)
Gene synonyms (human)	BHLHC6, SCDO2
Gene (mouse)	Mesp2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	14
Consensus	ndbAMCATATGGYd
GC content	44.96%
Information content (bits; total / per base)	15.903 / 1.136
Data sources	HT-SELEX
Aligned words	1754

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.763	0.767	0.625	0.643	0.562	0.583
Non-Methyl HT-SELEX, 1 experiments	best	0.763	0.767	0.625	0.643	0.562	0.583

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	Tal-related {1.2.3} (TFClass)
TF subfamily	MESP {1.2.3.3} (TFClass)
TFClass ID	TFClass: 1.2.3.3.2
HGNC	HGNC:29659
MGI	MGI:1096325
EntrezGene (human)	GeneID:145873 (SSTAR profile)
EntrezGene (mouse)	GeneID:17293 (SSTAR profile)
UniProt ID (human)	MESP2_HUMAN
UniProt ID (mouse)	MESP2_MOUSE
UniProt AC (human)	Q0VG99 (TFClass)
UniProt AC (mouse)	O08574 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	0

PCM	MESP2.H12INVITRO.0.S.C.pcm
PWM	MESP2.H12INVITRO.0.S.C.pwm
PFM	MESP2.H12INVITRO.0.S.C.pfm
Alignment	MESP2.H12INVITRO.0.S.C.words.tsv
Threshold to P-value map	MESP2.H12INVITRO.0.S.C.thr
Motif in other formats
JASPAR format	MESP2.H12INVITRO.0.S.C_jaspar_format.txt
MEME format	MESP2.H12INVITRO.0.S.C_meme_format.meme
Transfac format	MESP2.H12INVITRO.0.S.C_transfac_format.txt
Homer format	MESP2.H12INVITRO.0.S.C_homer_format_0.001.txt MESP2.H12INVITRO.0.S.C_homer_format_0.0005.txt MESP2.H12INVITRO.0.S.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	438.0	277.0	552.0	487.0
02	399.25	241.25	842.25	271.25
03	156.0	946.0	336.0	316.0
04	1233.0	11.0	496.0	14.0
05	1202.0	444.0	105.0	3.0
06	2.0	1742.0	7.0	3.0
07	1751.0	0.0	3.0	0.0
08	84.0	1.0	5.0	1664.0
09	1738.0	0.0	11.0	5.0
10	2.0	0.0	1.0	1751.0
11	3.0	1.0	1750.0	0.0
12	13.0	9.0	1315.0	417.0
13	64.0	782.0	69.0	839.0
14	404.25	182.25	911.25	256.25

PFM

	A	C	G	T
01	0.25	0.158	0.315	0.278
02	0.228	0.138	0.48	0.155
03	0.089	0.539	0.192	0.18
04	0.703	0.006	0.283	0.008
05	0.685	0.253	0.06	0.002
06	0.001	0.993	0.004	0.002
07	0.998	0.0	0.002	0.0
08	0.048	0.001	0.003	0.949
09	0.991	0.0	0.006	0.003
10	0.001	0.0	0.001	0.998
11	0.002	0.001	0.998	0.0
12	0.007	0.005	0.75	0.238
13	0.036	0.446	0.039	0.478
14	0.23	0.104	0.52	0.146

PWM

	A	C	G	T
01	-0.001	-0.457	0.229	0.104
02	-0.093	-0.594	0.651	-0.478
03	-1.026	0.767	-0.265	-0.326
04	1.031	-3.533	0.123	-3.323
05	1.006	0.012	-1.416	-4.505
06	-4.735	1.376	-3.905	-4.505
07	1.381	-5.463	-4.505	-5.463
08	-1.635	-5.034	-4.161	1.33
09	1.374	-5.463	-3.533	-4.161
10	-4.735	-5.463	-5.034	1.381
11	-4.505	-5.034	1.381	-5.463
12	-3.388	-3.702	1.095	-0.05
13	-1.9	0.577	-1.827	0.647
14	-0.081	-0.872	0.729	-0.534

Standard thresholds

P-value	Threshold
0.001	1.05386
0.0005	2.67556
0.0001	5.76506