| Motif | MESP1.H12INVIVO.0.S.D |
| Gene (human) | MESP1 (GeneCards) |
| Gene synonyms (human) | BHLHC5 |
| Gene (mouse) | Mesp1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MESP1.H12INVIVO.0.S.D |
| Gene (human) | MESP1 (GeneCards) |
| Gene synonyms (human) | BHLHC5 |
| Gene (mouse) | Mesp1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | nvvRGGTGbdn |
| GC content | 59.83% |
| Information content (bits; total / per base) | 8.004 / 0.728 |
| Data sources | HT-SELEX |
| Aligned words | 2005 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.649 | 0.614 | 0.588 | 0.572 | 0.551 | 0.547 |
| best | 0.649 | 0.614 | 0.588 | 0.572 | 0.551 | 0.547 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | MESP {1.2.3.3} (TFClass) |
| TFClass ID | TFClass: 1.2.3.3.1 |
| HGNC | HGNC:29658 |
| MGI | MGI:107785 |
| EntrezGene (human) | GeneID:55897 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17292 (SSTAR profile) |
| UniProt ID (human) | MESP1_HUMAN |
| UniProt ID (mouse) | MESP1_MOUSE |
| UniProt AC (human) | Q9BRJ9 (TFClass) |
| UniProt AC (mouse) | P97309 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | MESP1.H12INVIVO.0.S.D.pcm |
| PWM | MESP1.H12INVIVO.0.S.D.pwm |
| PFM | MESP1.H12INVIVO.0.S.D.pfm |
| Alignment | MESP1.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | MESP1.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | MESP1.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | MESP1.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | MESP1.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 459.25 | 344.25 | 707.25 | 494.25 |
| 02 | 459.75 | 307.75 | 947.75 | 289.75 |
| 03 | 317.0 | 986.0 | 461.0 | 241.0 |
| 04 | 1360.0 | 49.0 | 535.0 | 61.0 |
| 05 | 158.0 | 17.0 | 1823.0 | 7.0 |
| 06 | 34.0 | 92.0 | 1879.0 | 0.0 |
| 07 | 87.0 | 0.0 | 0.0 | 1918.0 |
| 08 | 88.0 | 25.0 | 1845.0 | 47.0 |
| 09 | 76.0 | 469.0 | 708.0 | 752.0 |
| 10 | 419.5 | 237.5 | 674.5 | 673.5 |
| 11 | 468.75 | 613.75 | 474.75 | 447.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.229 | 0.172 | 0.353 | 0.247 |
| 02 | 0.229 | 0.153 | 0.473 | 0.145 |
| 03 | 0.158 | 0.492 | 0.23 | 0.12 |
| 04 | 0.678 | 0.024 | 0.267 | 0.03 |
| 05 | 0.079 | 0.008 | 0.909 | 0.003 |
| 06 | 0.017 | 0.046 | 0.937 | 0.0 |
| 07 | 0.043 | 0.0 | 0.0 | 0.957 |
| 08 | 0.044 | 0.012 | 0.92 | 0.023 |
| 09 | 0.038 | 0.234 | 0.353 | 0.375 |
| 10 | 0.209 | 0.118 | 0.336 | 0.336 |
| 11 | 0.234 | 0.306 | 0.237 | 0.223 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.087 | -0.374 | 0.343 | -0.014 |
| 02 | -0.086 | -0.485 | 0.635 | -0.545 |
| 03 | -0.456 | 0.675 | -0.083 | -0.728 |
| 04 | 0.996 | -2.291 | 0.065 | -2.079 |
| 05 | -1.146 | -3.282 | 1.288 | -4.035 |
| 06 | -2.64 | -1.679 | 1.319 | -5.579 |
| 07 | -1.733 | -5.579 | -5.579 | 1.339 |
| 08 | -1.722 | -2.929 | 1.3 | -2.331 |
| 09 | -1.865 | -0.066 | 0.344 | 0.404 |
| 10 | -0.177 | -0.743 | 0.296 | 0.294 |
| 11 | -0.067 | 0.202 | -0.054 | -0.112 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.25011 |
| 0.0005 | 6.021955 |
| 0.0001 | 7.171585 |