| Motif | MEOX2.H12INVIVO.0.SM.D |
| Gene (human) | MEOX2 (GeneCards) |
| Gene synonyms (human) | GAX, MOX2 |
| Gene (mouse) | Meox2 |
| Gene synonyms (mouse) | Gax, Mox-2, Mox2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MEOX2.H12INVIVO.0.SM.D |
| Gene (human) | MEOX2 (GeneCards) |
| Gene synonyms (human) | GAX, MOX2 |
| Gene (mouse) | Meox2 |
| Gene synonyms (mouse) | Gax, Mox-2, Mox2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | nvbTAATKRbn |
| GC content | 35.16% |
| Information content (bits; total / per base) | 10.116 / 0.92 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9087 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.905 | 0.862 | 0.853 | 0.811 | 0.758 | 0.74 |
| best | 0.961 | 0.938 | 0.939 | 0.908 | 0.899 | 0.864 | |
| Methyl HT-SELEX, 1 experiments | median | 0.961 | 0.938 | 0.939 | 0.908 | 0.899 | 0.864 |
| best | 0.961 | 0.938 | 0.939 | 0.908 | 0.899 | 0.864 | |
| Non-Methyl HT-SELEX, 5 experiments | median | 0.861 | 0.807 | 0.785 | 0.739 | 0.679 | 0.664 |
| best | 0.959 | 0.935 | 0.924 | 0.893 | 0.881 | 0.84 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | MEOX {3.1.1.14} (TFClass) |
| TFClass ID | TFClass: 3.1.1.14.2 |
| HGNC | HGNC:7014 |
| MGI | MGI:103219 |
| EntrezGene (human) | GeneID:4223 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17286 (SSTAR profile) |
| UniProt ID (human) | MEOX2_HUMAN |
| UniProt ID (mouse) | MEOX2_MOUSE |
| UniProt AC (human) | P50222 (TFClass) |
| UniProt AC (mouse) | P32443 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 |
| Methyl-HT-SELEX | 1 |
| PCM | MEOX2.H12INVIVO.0.SM.D.pcm |
| PWM | MEOX2.H12INVIVO.0.SM.D.pwm |
| PFM | MEOX2.H12INVIVO.0.SM.D.pfm |
| Alignment | MEOX2.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | MEOX2.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | MEOX2.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | MEOX2.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | MEOX2.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2218.25 | 2990.25 | 2235.25 | 1643.25 |
| 02 | 1884.75 | 2554.75 | 4177.75 | 469.75 |
| 03 | 456.0 | 2613.0 | 2505.0 | 3513.0 |
| 04 | 0.0 | 2.0 | 0.0 | 9085.0 |
| 05 | 9051.0 | 0.0 | 36.0 | 0.0 |
| 06 | 9087.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 177.0 | 1.0 | 8909.0 |
| 08 | 6.0 | 1267.0 | 3219.0 | 4595.0 |
| 09 | 6737.0 | 152.0 | 2043.0 | 155.0 |
| 10 | 962.75 | 4075.75 | 1883.75 | 2164.75 |
| 11 | 1666.0 | 2700.0 | 2509.0 | 2212.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.244 | 0.329 | 0.246 | 0.181 |
| 02 | 0.207 | 0.281 | 0.46 | 0.052 |
| 03 | 0.05 | 0.288 | 0.276 | 0.387 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.996 | 0.0 | 0.004 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.019 | 0.0 | 0.98 |
| 08 | 0.001 | 0.139 | 0.354 | 0.506 |
| 09 | 0.741 | 0.017 | 0.225 | 0.017 |
| 10 | 0.106 | 0.449 | 0.207 | 0.238 |
| 11 | 0.183 | 0.297 | 0.276 | 0.243 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.024 | 0.275 | -0.016 | -0.323 |
| 02 | -0.187 | 0.117 | 0.609 | -1.572 |
| 03 | -1.602 | 0.14 | 0.098 | 0.436 |
| 04 | -6.906 | -6.276 | -6.906 | 1.385 |
| 05 | 1.382 | -6.906 | -4.084 | -6.906 |
| 06 | 1.386 | -6.906 | -6.906 | -6.906 |
| 07 | -6.906 | -2.54 | -6.542 | 1.366 |
| 08 | -5.616 | -0.583 | 0.348 | 0.704 |
| 09 | 1.086 | -2.691 | -0.106 | -2.671 |
| 10 | -0.857 | 0.584 | -0.187 | -0.048 |
| 11 | -0.31 | 0.173 | 0.099 | -0.027 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.908775 |
| 0.0005 | 6.222875 |
| 0.0001 | 7.668055 |