MotifMEOX1.H12INVITRO.0.SM.B
Gene (human)MEOX1
(GeneCards)
Gene synonyms (human)MOX1
Gene (mouse)Meox1
Gene synonyms (mouse)Mox-1, Mox1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusnvvbTAATKAbbn
GC content38.08%
Information content (bits; total / per base)11.113 / 0.855
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9750

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.89 0.858 0.811 0.788 0.748 0.733
best 0.979 0.967 0.963 0.944 0.929 0.904
Methyl HT-SELEX, 1 experiments median 0.979 0.967 0.963 0.944 0.929 0.904
best 0.979 0.967 0.963 0.944 0.929 0.904
Non-Methyl HT-SELEX, 3 experiments median 0.826 0.788 0.692 0.68 0.601 0.61
best 0.955 0.928 0.931 0.897 0.896 0.857

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.611 0.188 0.552 0.301
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyMEOX {3.1.1.14} (TFClass)
TFClass IDTFClass: 3.1.1.14.1
HGNCHGNC:7013
MGIMGI:103220
EntrezGene (human)GeneID:4222
(SSTAR profile)
EntrezGene (mouse)GeneID:17285
(SSTAR profile)
UniProt ID (human)MEOX1_HUMAN
UniProt ID (mouse)MEOX1_MOUSE
UniProt AC (human)P50221
(TFClass)
UniProt AC (mouse)P32442
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012632.02390.02595.02133.0
022015.254404.251893.251437.25
032256.02667.04422.0405.0
04447.04327.01680.03296.0
050.03.00.09747.0
069686.00.064.00.0
079750.00.00.00.0
080.0179.00.09571.0
090.0361.02905.06484.0
108184.055.01430.081.0
11791.04675.02516.01768.0
121225.03336.03321.01868.0
132249.02734.02305.02462.0
PFM
ACGT
010.270.2450.2660.219
020.2070.4520.1940.147
030.2310.2740.4540.042
040.0460.4440.1720.338
050.00.00.01.0
060.9930.00.0070.0
071.00.00.00.0
080.00.0180.00.982
090.00.0370.2980.665
100.8390.0060.1470.008
110.0810.4790.2580.181
120.1260.3420.3410.192
130.2310.280.2360.253
PWM
ACGT
010.077-0.020.063-0.133
02-0.190.591-0.252-0.528
03-0.0770.090.595-1.79
04-1.6920.573-0.3720.301
05-6.968-6.133-6.9681.385
061.379-6.968-3.606-6.968
071.386-6.968-6.968-6.968
08-6.968-2.6-6.9681.367
09-6.968-1.9040.1750.978
101.211-3.751-0.533-3.377
11-1.1230.6510.032-0.321
12-0.6870.3140.309-0.266
13-0.080.115-0.0560.01
Standard thresholds
P-value Threshold
0.001 4.14671
0.0005 5.63142
0.0001 7.77722