| Motif | MEIS1.H12CORE.1.PS.A |
| Gene (human) | MEIS1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Meis1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | A |
| Motif | MEIS1.H12CORE.1.PS.A |
| Gene (human) | MEIS1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Meis1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | A |
| Motif length | 11 |
| Consensus | nnnWGACAKnh |
| GC content | 51.7% |
| Information content (bits; total / per base) | 7.522 / 0.684 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 996 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (16) | 0.687 | 0.708 | 0.536 | 0.577 | 0.61 | 0.642 | 1.465 | 1.693 | 28.181 | 74.886 |
| Mouse | 18 (114) | 0.74 | 0.824 | 0.577 | 0.702 | 0.685 | 0.787 | 1.813 | 2.453 | 78.44 | 249.585 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.943 | 0.903 | 0.918 | 0.875 | 0.869 | 0.827 |
| best | 0.943 | 0.903 | 0.918 | 0.875 | 0.869 | 0.827 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | MEIS {3.1.4.2} (TFClass) |
| TFClass ID | TFClass: 3.1.4.2.1 |
| HGNC | HGNC:7000 |
| MGI | MGI:104717 |
| EntrezGene (human) | GeneID:4211 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17268 (SSTAR profile) |
| UniProt ID (human) | MEIS1_HUMAN |
| UniProt ID (mouse) | MEIS1_MOUSE |
| UniProt AC (human) | O00470 (TFClass) |
| UniProt AC (mouse) | Q60954 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 18 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | MEIS1.H12CORE.1.PS.A.pcm |
| PWM | MEIS1.H12CORE.1.PS.A.pwm |
| PFM | MEIS1.H12CORE.1.PS.A.pfm |
| Alignment | MEIS1.H12CORE.1.PS.A.words.tsv |
| Threshold to P-value map | MEIS1.H12CORE.1.PS.A.thr |
| Motif in other formats | |
| JASPAR format | MEIS1.H12CORE.1.PS.A_jaspar_format.txt |
| MEME format | MEIS1.H12CORE.1.PS.A_meme_format.meme |
| Transfac format | MEIS1.H12CORE.1.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 228.0 | 198.0 | 342.0 | 228.0 |
| 02 | 348.0 | 178.0 | 260.0 | 210.0 |
| 03 | 178.0 | 329.0 | 322.0 | 167.0 |
| 04 | 100.0 | 19.0 | 95.0 | 782.0 |
| 05 | 1.0 | 11.0 | 962.0 | 22.0 |
| 06 | 804.0 | 1.0 | 191.0 | 0.0 |
| 07 | 12.0 | 922.0 | 29.0 | 33.0 |
| 08 | 830.0 | 17.0 | 43.0 | 106.0 |
| 09 | 71.0 | 98.0 | 670.0 | 157.0 |
| 10 | 198.0 | 297.0 | 321.0 | 180.0 |
| 11 | 241.0 | 210.0 | 149.0 | 396.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.229 | 0.199 | 0.343 | 0.229 |
| 02 | 0.349 | 0.179 | 0.261 | 0.211 |
| 03 | 0.179 | 0.33 | 0.323 | 0.168 |
| 04 | 0.1 | 0.019 | 0.095 | 0.785 |
| 05 | 0.001 | 0.011 | 0.966 | 0.022 |
| 06 | 0.807 | 0.001 | 0.192 | 0.0 |
| 07 | 0.012 | 0.926 | 0.029 | 0.033 |
| 08 | 0.833 | 0.017 | 0.043 | 0.106 |
| 09 | 0.071 | 0.098 | 0.673 | 0.158 |
| 10 | 0.199 | 0.298 | 0.322 | 0.181 |
| 11 | 0.242 | 0.211 | 0.15 | 0.398 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.087 | -0.227 | 0.315 | -0.087 |
| 02 | 0.333 | -0.333 | 0.043 | -0.169 |
| 03 | -0.333 | 0.277 | 0.256 | -0.396 |
| 04 | -0.902 | -2.493 | -0.952 | 1.14 |
| 05 | -4.522 | -2.981 | 1.346 | -2.358 |
| 06 | 1.167 | -4.522 | -0.263 | -4.979 |
| 07 | -2.905 | 1.304 | -2.099 | -1.977 |
| 08 | 1.199 | -2.594 | -1.724 | -0.845 |
| 09 | -1.238 | -0.922 | 0.985 | -0.457 |
| 10 | -0.227 | 0.175 | 0.252 | -0.322 |
| 11 | -0.032 | -0.169 | -0.509 | 0.461 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.18268 |
| 0.0005 | 5.774585 |
| 0.0001 | 7.111415 |