MotifMEIS1.H12CORE.0.P.B
Gene (human)MEIS1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Meis1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusdTGATTKAYddbh
GC content36.48%
Information content (bits; total / per base)10.924 / 0.84
Data sourcesChIP-Seq
Aligned words997

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (16) 0.829 0.898 0.753 0.845 0.823 0.887 2.985 3.657 141.721 284.337
Mouse 18 (114) 0.843 0.908 0.733 0.833 0.822 0.895 2.837 3.462 175.181 464.678

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 1 experiments median 0.676 0.627 0.63 0.593 0.594 0.57
best 0.676 0.627 0.63 0.593 0.594 0.57
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyMEIS {3.1.4.2} (TFClass)
TFClass IDTFClass: 3.1.4.2.1
HGNCHGNC:7000
MGIMGI:104717
EntrezGene (human)GeneID:4211
(SSTAR profile)
EntrezGene (mouse)GeneID:17268
(SSTAR profile)
UniProt ID (human)MEIS1_HUMAN
UniProt ID (mouse)MEIS1_MOUSE
UniProt AC (human)O00470
(TFClass)
UniProt AC (mouse)Q60954
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 18 mouse
HT-SELEX 1
Methyl-HT-SELEX 0
PCM
ACGT
01370.0137.0285.0205.0
02125.04.052.0816.0
0362.06.0914.015.0
04989.02.02.04.0
0518.055.0124.0800.0
0653.03.0101.0840.0
07107.028.0408.0454.0
08961.04.031.01.0
0915.0253.037.0692.0
10264.031.0491.0211.0
11229.064.0540.0164.0
12122.0435.0250.0190.0
13169.0317.0154.0357.0
PFM
ACGT
010.3710.1370.2860.206
020.1250.0040.0520.818
030.0620.0060.9170.015
040.9920.0020.0020.004
050.0180.0550.1240.802
060.0530.0030.1010.843
070.1070.0280.4090.455
080.9640.0040.0310.001
090.0150.2540.0370.694
100.2650.0310.4920.212
110.230.0640.5420.164
120.1220.4360.2510.191
130.170.3180.1540.358
PWM
ACGT
010.393-0.5930.133-0.194
02-0.683-3.78-1.5411.181
03-1.371-3.4811.294-2.708
041.373-4.21-4.21-3.78
05-2.543-1.487-0.6911.161
06-1.523-3.972-0.8931.21
07-0.837-2.1330.490.597
081.344-3.78-2.037-4.522
09-2.7080.015-1.8691.017
100.057-2.0370.675-0.165
11-0.084-1.340.769-0.415
12-0.7070.5540.003-0.269
13-0.3850.239-0.4770.357
Standard thresholds
P-value Threshold
0.001 4.52186
0.0005 5.45696
0.0001 7.33441