| Motif | MEF2A.H12RSNP.0.P.D |
| Gene (human) | MEF2A (GeneCards) |
| Gene synonyms (human) | MEF2 |
| Gene (mouse) | Mef2a |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MEF2A.H12RSNP.0.P.D |
| Gene (human) | MEF2A (GeneCards) |
| Gene synonyms (human) | MEF2 |
| Gene (mouse) | Mef2a |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 13 |
| Consensus | ddCTATTTWTARh |
| GC content | 29.3% |
| Information content (bits; total / per base) | 13.116 / 1.009 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 4 (28) | 0.854 | 0.924 | 0.774 | 0.901 | 0.904 | 0.946 | 3.907 | 5.132 | 255.227 | 450.31 |
| Mouse | 6 (35) | 0.875 | 0.95 | 0.801 | 0.896 | 0.884 | 0.954 | 4.013 | 4.673 | 236.77 | 347.523 |
| TF superclass | alpha-Helices exposed by beta-structures {5} (TFClass) |
| TF class | MADS box factors {5.1} (TFClass) |
| TF family | Regulators of differentiation {5.1.1} (TFClass) |
| TF subfamily | MEF2 {5.1.1.1} (TFClass) |
| TFClass ID | TFClass: 5.1.1.1.1 |
| HGNC | HGNC:6993 |
| MGI | MGI:99532 |
| EntrezGene (human) | GeneID:4205 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17258 (SSTAR profile) |
| UniProt ID (human) | MEF2A_HUMAN |
| UniProt ID (mouse) | MEF2A_MOUSE |
| UniProt AC (human) | Q02078 (TFClass) |
| UniProt AC (mouse) | Q60929 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 4 human, 6 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | MEF2A.H12RSNP.0.P.D.pcm |
| PWM | MEF2A.H12RSNP.0.P.D.pwm |
| PFM | MEF2A.H12RSNP.0.P.D.pfm |
| Alignment | MEF2A.H12RSNP.0.P.D.words.tsv |
| Threshold to P-value map | MEF2A.H12RSNP.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | MEF2A.H12RSNP.0.P.D_jaspar_format.txt |
| MEME format | MEF2A.H12RSNP.0.P.D_meme_format.meme |
| Transfac format | MEF2A.H12RSNP.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 272.0 | 83.0 | 279.0 | 367.0 |
| 02 | 93.0 | 81.0 | 438.0 | 389.0 |
| 03 | 29.0 | 790.0 | 36.0 | 146.0 |
| 04 | 2.0 | 40.0 | 0.0 | 959.0 |
| 05 | 947.0 | 11.0 | 14.0 | 29.0 |
| 06 | 76.0 | 13.0 | 4.0 | 908.0 |
| 07 | 80.0 | 15.0 | 11.0 | 895.0 |
| 08 | 37.0 | 49.0 | 5.0 | 910.0 |
| 09 | 202.0 | 109.0 | 7.0 | 683.0 |
| 10 | 91.0 | 28.0 | 75.0 | 807.0 |
| 11 | 617.0 | 3.0 | 380.0 | 1.0 |
| 12 | 102.0 | 32.0 | 773.0 | 94.0 |
| 13 | 359.0 | 437.0 | 100.0 | 105.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.272 | 0.083 | 0.279 | 0.367 |
| 02 | 0.093 | 0.081 | 0.438 | 0.389 |
| 03 | 0.029 | 0.789 | 0.036 | 0.146 |
| 04 | 0.002 | 0.04 | 0.0 | 0.958 |
| 05 | 0.946 | 0.011 | 0.014 | 0.029 |
| 06 | 0.076 | 0.013 | 0.004 | 0.907 |
| 07 | 0.08 | 0.015 | 0.011 | 0.894 |
| 08 | 0.037 | 0.049 | 0.005 | 0.909 |
| 09 | 0.202 | 0.109 | 0.007 | 0.682 |
| 10 | 0.091 | 0.028 | 0.075 | 0.806 |
| 11 | 0.616 | 0.003 | 0.38 | 0.001 |
| 12 | 0.102 | 0.032 | 0.772 | 0.094 |
| 13 | 0.359 | 0.437 | 0.1 | 0.105 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.083 | -1.09 | 0.108 | 0.381 |
| 02 | -0.978 | -1.114 | 0.557 | 0.439 |
| 03 | -2.104 | 1.145 | -1.899 | -0.534 |
| 04 | -4.214 | -1.798 | -4.983 | 1.338 |
| 05 | 1.326 | -2.986 | -2.774 | -2.104 |
| 06 | -1.176 | -2.84 | -3.784 | 1.284 |
| 07 | -1.126 | -2.712 | -2.986 | 1.269 |
| 08 | -1.873 | -1.603 | -3.623 | 1.286 |
| 09 | -0.213 | -0.822 | -3.363 | 1.0 |
| 10 | -1.0 | -2.137 | -1.189 | 1.166 |
| 11 | 0.898 | -3.976 | 0.415 | -4.526 |
| 12 | -0.888 | -2.011 | 1.123 | -0.968 |
| 13 | 0.359 | 0.555 | -0.907 | -0.859 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.797515 |
| 0.0005 | 4.84146 |
| 0.0001 | 7.00154 |