MotifMEF2A.H12INVIVO.0.P.B
Gene (human)MEF2A
(GeneCards)
Gene synonyms (human)MEF2
Gene (mouse)Mef2a
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusddCTATTTWTARh
GC content29.3%
Information content (bits; total / per base)13.116 / 1.009
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (28) 0.854 0.924 0.774 0.901 0.904 0.946 3.907 5.132 255.227 450.31
Mouse 6 (35) 0.875 0.95 0.801 0.896 0.884 0.954 4.013 4.673 236.77 347.523
TF superclassalpha-Helices exposed by beta-structures {5} (TFClass)
TF classMADS box factors {5.1} (TFClass)
TF familyRegulators of differentiation {5.1.1} (TFClass)
TF subfamilyMEF2 {5.1.1.1} (TFClass)
TFClass IDTFClass: 5.1.1.1.1
HGNCHGNC:6993
MGIMGI:99532
EntrezGene (human)GeneID:4205
(SSTAR profile)
EntrezGene (mouse)GeneID:17258
(SSTAR profile)
UniProt ID (human)MEF2A_HUMAN
UniProt ID (mouse)MEF2A_MOUSE
UniProt AC (human)Q02078
(TFClass)
UniProt AC (mouse)Q60929
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 6 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01272.083.0279.0367.0
0293.081.0438.0389.0
0329.0790.036.0146.0
042.040.00.0959.0
05947.011.014.029.0
0676.013.04.0908.0
0780.015.011.0895.0
0837.049.05.0910.0
09202.0109.07.0683.0
1091.028.075.0807.0
11617.03.0380.01.0
12102.032.0773.094.0
13359.0437.0100.0105.0
PFM
ACGT
010.2720.0830.2790.367
020.0930.0810.4380.389
030.0290.7890.0360.146
040.0020.040.00.958
050.9460.0110.0140.029
060.0760.0130.0040.907
070.080.0150.0110.894
080.0370.0490.0050.909
090.2020.1090.0070.682
100.0910.0280.0750.806
110.6160.0030.380.001
120.1020.0320.7720.094
130.3590.4370.10.105
PWM
ACGT
010.083-1.090.1080.381
02-0.978-1.1140.5570.439
03-2.1041.145-1.899-0.534
04-4.214-1.798-4.9831.338
051.326-2.986-2.774-2.104
06-1.176-2.84-3.7841.284
07-1.126-2.712-2.9861.269
08-1.873-1.603-3.6231.286
09-0.213-0.822-3.3631.0
10-1.0-2.137-1.1891.166
110.898-3.9760.415-4.526
12-0.888-2.0111.123-0.968
130.3590.555-0.907-0.859
Standard thresholds
P-value Threshold
0.001 3.797515
0.0005 4.84146
0.0001 7.00154