MAZ.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MAZ.H12INVIVO.1.P.B
Gene (human)	MAZ (GeneCards)
Gene synonyms (human)	ZNF801
Gene (mouse)	Maz
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	21
Consensus	dRRRGGMGGRGvvdRRvRvvv
GC content	71.76%
Information content (bits; total / per base)	14.382 / 0.685
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (33)	0.759	0.817	0.564	0.671	0.854	0.925	3.337	4.431	17.854	80.824
Mouse	2 (12)	0.779	0.831	0.595	0.672	0.81	0.894	3.222	4.165	43.869	61.398

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.474	0.637	0.037	0.021

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.1
HGNC	HGNC:6914
MGI	MGI:1338823
EntrezGene (human)	GeneID:4150 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	MAZ_HUMAN
UniProt ID (mouse)	MAZ_MOUSE
UniProt AC (human)	P56270 (TFClass)
UniProt AC (mouse)	P56671 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	MAZ.H12INVIVO.1.P.B.pcm
PWM	MAZ.H12INVIVO.1.P.B.pwm
PFM	MAZ.H12INVIVO.1.P.B.pfm
Alignment	MAZ.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	MAZ.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	MAZ.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	MAZ.H12INVIVO.1.P.B_meme_format.meme
Transfac format	MAZ.H12INVIVO.1.P.B_transfac_format.txt
Homer format	MAZ.H12INVIVO.1.P.B_homer_format_0.001.txt MAZ.H12INVIVO.1.P.B_homer_format_0.0005.txt MAZ.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	356.0	102.0	405.0	137.0
02	189.0	77.0	646.0	88.0
03	344.0	73.0	516.0	67.0
04	279.0	22.0	682.0	17.0
05	46.0	18.0	904.0	32.0
06	16.0	24.0	951.0	9.0
07	509.0	391.0	6.0	94.0
08	36.0	3.0	938.0	23.0
09	18.0	16.0	951.0	15.0
10	284.0	33.0	654.0	29.0
11	108.0	49.0	825.0	18.0
12	190.0	395.0	356.0	59.0
13	264.0	319.0	306.0	111.0
14	302.0	75.0	533.0	90.0
15	196.0	102.0	654.0	48.0
16	313.0	108.0	533.0	46.0
17	294.0	121.0	533.0	52.0
18	254.0	144.0	556.0	46.0
19	270.0	154.0	474.0	102.0
20	241.0	126.0	553.0	80.0
21	199.0	207.0	534.0	60.0

PFM

	A	C	G	T
01	0.356	0.102	0.405	0.137
02	0.189	0.077	0.646	0.088
03	0.344	0.073	0.516	0.067
04	0.279	0.022	0.682	0.017
05	0.046	0.018	0.904	0.032
06	0.016	0.024	0.951	0.009
07	0.509	0.391	0.006	0.094
08	0.036	0.003	0.938	0.023
09	0.018	0.016	0.951	0.015
10	0.284	0.033	0.654	0.029
11	0.108	0.049	0.825	0.018
12	0.19	0.395	0.356	0.059
13	0.264	0.319	0.306	0.111
14	0.302	0.075	0.533	0.09
15	0.196	0.102	0.654	0.048
16	0.313	0.108	0.533	0.046
17	0.294	0.121	0.533	0.052
18	0.254	0.144	0.556	0.046
19	0.27	0.154	0.474	0.102
20	0.241	0.126	0.553	0.08
21	0.199	0.207	0.534	0.06

PWM

	A	C	G	T
01	0.351	-0.887	0.48	-0.596
02	-0.278	-1.162	0.945	-1.032
03	0.317	-1.215	0.721	-1.298
04	0.109	-2.362	0.999	-2.598
05	-1.663	-2.546	1.28	-2.01
06	-2.653	-2.281	1.331	-3.156
07	0.707	0.445	-3.484	-0.967
08	-1.898	-3.975	1.317	-2.32
09	-2.546	-2.653	1.331	-2.711
10	0.127	-1.981	0.957	-2.103
11	-0.83	-1.602	1.189	-2.546
12	-0.272	0.455	0.351	-1.422
13	0.054	0.242	0.201	-0.803
14	0.188	-1.188	0.753	-1.01
15	-0.241	-0.887	0.957	-1.622
16	0.223	-0.83	0.753	-1.663
17	0.161	-0.718	0.753	-1.544
18	0.016	-0.547	0.796	-1.663
19	0.076	-0.48	0.636	-0.887
20	-0.036	-0.678	0.79	-1.125
21	-0.226	-0.187	0.755	-1.406

Standard thresholds

P-value	Threshold
0.001	3.48346
0.0005	4.52996
0.0001	6.73051