MAZ.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MAZ.H12INVIVO.0.P.B
Gene (human)	MAZ (GeneCards)
Gene synonyms (human)	ZNF801
Gene (mouse)	Maz
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	14
Consensus	vvvvvRGGMGGGRv
GC content	76.09%
Information content (bits; total / per base)	11.991 / 0.857
Data sources	ChIP-Seq
Aligned words	923

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (33)	0.781	0.854	0.56	0.663	0.85	0.922	2.779	3.42	25.26	147.481
Mouse	2 (12)	0.799	0.836	0.611	0.678	0.814	0.877	2.655	3.206	63.586	104.125

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.426	0.532	0.032	0.004

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.1
HGNC	HGNC:6914
MGI	MGI:1338823
EntrezGene (human)	GeneID:4150 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	MAZ_HUMAN
UniProt ID (mouse)	MAZ_MOUSE
UniProt AC (human)	P56270 (TFClass)
UniProt AC (mouse)	P56671 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	MAZ.H12INVIVO.0.P.B.pcm
PWM	MAZ.H12INVIVO.0.P.B.pwm
PFM	MAZ.H12INVIVO.0.P.B.pfm
Alignment	MAZ.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	MAZ.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	MAZ.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	MAZ.H12INVIVO.0.P.B_meme_format.meme
Transfac format	MAZ.H12INVIVO.0.P.B_transfac_format.txt
Homer format	MAZ.H12INVIVO.0.P.B_homer_format_0.001.txt MAZ.H12INVIVO.0.P.B_homer_format_0.0005.txt MAZ.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	184.0	177.0	475.0	87.0
02	188.0	196.0	465.0	74.0
03	226.0	168.0	465.0	64.0
04	301.0	124.0	409.0	89.0
05	247.0	131.0	465.0	80.0
06	144.0	39.0	693.0	47.0
07	28.0	14.0	866.0	15.0
08	76.0	15.0	830.0	2.0
09	497.0	327.0	0.0	99.0
10	2.0	1.0	842.0	78.0
11	4.0	2.0	913.0	4.0
12	68.0	20.0	833.0	2.0
13	247.0	19.0	646.0	11.0
14	175.0	267.0	430.0	51.0

PFM

	A	C	G	T
01	0.199	0.192	0.515	0.094
02	0.204	0.212	0.504	0.08
03	0.245	0.182	0.504	0.069
04	0.326	0.134	0.443	0.096
05	0.268	0.142	0.504	0.087
06	0.156	0.042	0.751	0.051
07	0.03	0.015	0.938	0.016
08	0.082	0.016	0.899	0.002
09	0.538	0.354	0.0	0.107
10	0.002	0.001	0.912	0.085
11	0.004	0.002	0.989	0.004
12	0.074	0.022	0.902	0.002
13	0.268	0.021	0.7	0.012
14	0.19	0.289	0.466	0.055

PWM

	A	C	G	T
01	-0.225	-0.263	0.718	-0.963
02	-0.203	-0.162	0.697	-1.122
03	-0.021	-0.315	0.697	-1.264
04	0.264	-0.615	0.569	-0.941
05	0.068	-0.561	0.697	-1.046
06	-0.467	-1.742	1.095	-1.563
07	-2.057	-2.695	1.317	-2.633
08	-1.096	-2.633	1.275	-4.139
09	0.763	0.346	-4.914	-0.836
10	-4.139	-4.453	1.289	-1.07
11	-3.707	-4.139	1.37	-3.707
12	-1.204	-2.371	1.278	-4.139
13	0.068	-2.418	1.025	-2.907
14	-0.274	0.145	0.619	-1.484

Standard thresholds

P-value	Threshold
0.001	4.17461
0.0005	5.18151
0.0001	7.22926