MAZ.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MAZ.H12INVITRO.0.P.D
Gene (human)	MAZ (GeneCards)
Gene synonyms (human)	ZNF801
Gene (mouse)	Maz
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	13
Consensus	vvvRGGMGGRRvv
GC content	73.82%
Information content (bits; total / per base)	9.562 / 0.736
Data sources	ChIP-Seq
Aligned words	976

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (33)	0.781	0.852	0.58	0.694	0.822	0.9	2.499	3.102	22.569	121.569
Mouse	2 (12)	0.792	0.832	0.614	0.676	0.78	0.845	2.392	2.829	55.671	82.444

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.056	1.622	0.046	0.02

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.1
HGNC	HGNC:6914
MGI	MGI:1338823
EntrezGene (human)	GeneID:4150 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	MAZ_HUMAN
UniProt ID (mouse)	MAZ_MOUSE
UniProt AC (human)	P56270 (TFClass)
UniProt AC (mouse)	P56671 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	MAZ.H12INVITRO.0.P.D.pcm
PWM	MAZ.H12INVITRO.0.P.D.pwm
PFM	MAZ.H12INVITRO.0.P.D.pfm
Alignment	MAZ.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	MAZ.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	MAZ.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	MAZ.H12INVITRO.0.P.D_meme_format.meme
Transfac format	MAZ.H12INVITRO.0.P.D_transfac_format.txt
Homer format	MAZ.H12INVITRO.0.P.D_homer_format_0.001.txt MAZ.H12INVITRO.0.P.D_homer_format_0.0005.txt MAZ.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	271.0	176.0	484.0	45.0
02	232.0	200.0	480.0	64.0
03	320.0	198.0	395.0	63.0
04	171.0	64.0	686.0	55.0
05	32.0	31.0	885.0	28.0
06	12.0	109.0	848.0	7.0
07	564.0	285.0	1.0	126.0
08	107.0	7.0	851.0	11.0
09	49.0	55.0	846.0	26.0
10	225.0	64.0	622.0	65.0
11	250.0	19.0	688.0	19.0
12	129.0	253.0	540.0	54.0
13	267.0	417.0	162.0	130.0

PFM

	A	C	G	T
01	0.278	0.18	0.496	0.046
02	0.238	0.205	0.492	0.066
03	0.328	0.203	0.405	0.065
04	0.175	0.066	0.703	0.056
05	0.033	0.032	0.907	0.029
06	0.012	0.112	0.869	0.007
07	0.578	0.292	0.001	0.129
08	0.11	0.007	0.872	0.011
09	0.05	0.056	0.867	0.027
10	0.231	0.066	0.637	0.067
11	0.256	0.019	0.705	0.019
12	0.132	0.259	0.553	0.055
13	0.274	0.427	0.166	0.133

PWM

	A	C	G	T
01	0.104	-0.324	0.681	-1.66
02	-0.05	-0.197	0.673	-1.319
03	0.269	-0.207	0.479	-1.334
04	-0.353	-1.319	1.029	-1.466
05	-1.986	-2.016	1.283	-2.112
06	-2.885	-0.797	1.241	-3.338
07	0.834	0.154	-4.503	-0.654
08	-0.815	-3.338	1.244	-2.961
09	-1.578	-1.466	1.238	-2.182
10	-0.08	-1.319	0.932	-1.304
11	0.024	-2.473	1.032	-2.473
12	-0.631	0.036	0.791	-1.484
13	0.089	0.533	-0.406	-0.624

Standard thresholds

P-value	Threshold
0.001	4.79941
0.0005	5.59296
0.0001	7.218615