MotifMAD4.H12INVIVO.0.P.C
Gene (human)MXD4
(GeneCards)
Gene synonyms (human)BHLHC12, MAD4
Gene (mouse)Mxd4
Gene synonyms (mouse)Mad4
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length8
ConsensusMdCSTGSn
GC content65.4%
Information content (bits; total / per base)7.0 / 0.875
Data sourcesChIP-Seq
Aligned words994

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.793 0.823 0.701 0.739 0.7 0.737 2.097 2.281 131.495 195.284
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familybHLH-ZIP {1.2.6} (TFClass)
TF subfamilyMAD {1.2.6.7} (TFClass)
TFClass IDTFClass: 1.2.6.7.3
HGNCHGNC:13906
MGIMGI:104991
EntrezGene (human)GeneID:10608
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)MAD4_HUMAN
UniProt ID (mouse)MAD4_MOUSE
UniProt AC (human)Q14582
(TFClass)
UniProt AC (mouse)Q60948
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01145.0697.0119.033.0
02524.074.0309.087.0
0367.0842.059.026.0
04124.0158.0688.024.0
057.02.013.0972.0
064.06.0952.032.0
0742.0256.0559.0137.0
08193.0307.0160.0334.0
PFM
ACGT
010.1460.7010.120.033
020.5270.0740.3110.088
030.0670.8470.0590.026
040.1250.1590.6920.024
050.0070.0020.0130.978
060.0040.0060.9580.032
070.0420.2580.5620.138
080.1940.3090.1610.336
PWM
ACGT
01-0.5341.027-0.729-1.975
020.742-1.1950.217-1.037
03-1.2921.215-1.416-2.2
04-0.688-0.4491.014-2.275
05-3.356-4.207-2.8331.359
06-3.777-3.4781.338-2.004
07-1.7440.030.807-0.59
08-0.2510.21-0.4360.294
Standard thresholds
P-value Threshold
0.001 5.195125
0.0005 5.782855
0.0001 6.98399