| Motif | MAD4.H12INVITRO.0.P.D |
| Gene (human) | MXD4 (GeneCards) |
| Gene synonyms (human) | BHLHC12, MAD4 |
| Gene (mouse) | Mxd4 |
| Gene synonyms (mouse) | Mad4 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | MAD4.H12INVITRO.0.P.D |
| Gene (human) | MXD4 (GeneCards) |
| Gene synonyms (human) | BHLHC12, MAD4 |
| Gene (mouse) | Mxd4 |
| Gene synonyms (mouse) | Mad4 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | MdCSTGSn |
| GC content | 65.4% |
| Information content (bits; total / per base) | 7.0 / 0.875 |
| Data sources | ChIP-Seq |
| Aligned words | 994 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (7) | 0.793 | 0.823 | 0.701 | 0.739 | 0.7 | 0.737 | 2.097 | 2.281 | 131.495 | 195.284 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | bHLH-ZIP {1.2.6} (TFClass) |
| TF subfamily | MAD {1.2.6.7} (TFClass) |
| TFClass ID | TFClass: 1.2.6.7.3 |
| HGNC | HGNC:13906 |
| MGI | MGI:104991 |
| EntrezGene (human) | GeneID:10608 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | MAD4_HUMAN |
| UniProt ID (mouse) | MAD4_MOUSE |
| UniProt AC (human) | Q14582 (TFClass) |
| UniProt AC (mouse) | Q60948 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | MAD4.H12INVITRO.0.P.D.pcm |
| PWM | MAD4.H12INVITRO.0.P.D.pwm |
| PFM | MAD4.H12INVITRO.0.P.D.pfm |
| Alignment | MAD4.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | MAD4.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | MAD4.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | MAD4.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | MAD4.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 145.0 | 697.0 | 119.0 | 33.0 |
| 02 | 524.0 | 74.0 | 309.0 | 87.0 |
| 03 | 67.0 | 842.0 | 59.0 | 26.0 |
| 04 | 124.0 | 158.0 | 688.0 | 24.0 |
| 05 | 7.0 | 2.0 | 13.0 | 972.0 |
| 06 | 4.0 | 6.0 | 952.0 | 32.0 |
| 07 | 42.0 | 256.0 | 559.0 | 137.0 |
| 08 | 193.0 | 307.0 | 160.0 | 334.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.146 | 0.701 | 0.12 | 0.033 |
| 02 | 0.527 | 0.074 | 0.311 | 0.088 |
| 03 | 0.067 | 0.847 | 0.059 | 0.026 |
| 04 | 0.125 | 0.159 | 0.692 | 0.024 |
| 05 | 0.007 | 0.002 | 0.013 | 0.978 |
| 06 | 0.004 | 0.006 | 0.958 | 0.032 |
| 07 | 0.042 | 0.258 | 0.562 | 0.138 |
| 08 | 0.194 | 0.309 | 0.161 | 0.336 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.534 | 1.027 | -0.729 | -1.975 |
| 02 | 0.742 | -1.195 | 0.217 | -1.037 |
| 03 | -1.292 | 1.215 | -1.416 | -2.2 |
| 04 | -0.688 | -0.449 | 1.014 | -2.275 |
| 05 | -3.356 | -4.207 | -2.833 | 1.359 |
| 06 | -3.777 | -3.478 | 1.338 | -2.004 |
| 07 | -1.744 | 0.03 | 0.807 | -0.59 |
| 08 | -0.251 | 0.21 | -0.436 | 0.294 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.195125 |
| 0.0005 | 5.782855 |
| 0.0001 | 6.98399 |