MotifLYL1.H12INVIVO.0.P.C
Gene (human)LYL1
(GeneCards)
Gene synonyms (human)BHLHA18
Gene (mouse)Lyl1
Gene synonyms (mouse)Lyl-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length13
ConsensusnvYhbCTGbbbnb
GC content53.51%
Information content (bits; total / per base)7.146 / 0.55
Data sourcesChIP-Seq
Aligned words916

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (14) 0.715 0.776 0.563 0.664 0.714 0.757 2.06 2.504 53.089 69.886
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTAL-HEN {1.2.3.1} (TFClass)
TFClass IDTFClass: 1.2.3.1.3
HGNCHGNC:6734
MGIMGI:96891
EntrezGene (human)GeneID:4066
(SSTAR profile)
EntrezGene (mouse)GeneID:17095
(SSTAR profile)
UniProt ID (human)LYL1_HUMAN
UniProt ID (mouse)LYL1_MOUSE
UniProt AC (human)P12980
(TFClass)
UniProt AC (mouse)P27792
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01271.0245.0264.0136.0
02284.0369.0132.0131.0
03157.0533.045.0181.0
04476.0101.098.0241.0
0554.0165.0256.0441.0
061.0859.029.027.0
073.04.00.0909.0
082.026.0860.028.0
0922.0350.0209.0335.0
10149.0193.0185.0389.0
11151.0157.0200.0408.0
12144.0323.0191.0258.0
1396.0403.0175.0242.0
PFM
ACGT
010.2960.2670.2880.148
020.310.4030.1440.143
030.1710.5820.0490.198
040.520.110.1070.263
050.0590.180.2790.481
060.0010.9380.0320.029
070.0030.0040.00.992
080.0020.0280.9390.031
090.0240.3820.2280.366
100.1630.2110.2020.425
110.1650.1710.2180.445
120.1570.3530.2090.282
130.1050.440.1910.264
PWM
ACGT
010.1670.0670.141-0.516
020.2140.474-0.546-0.553
03-0.3740.841-1.597-0.233
040.728-0.809-0.8390.051
05-1.421-0.3250.1110.652
06-4.4461.317-2.017-2.084
07-3.893-3.7-4.9081.373
08-4.131-2.121.318-2.05
09-2.2750.422-0.0910.378
10-0.426-0.17-0.2120.527
11-0.413-0.374-0.1340.574
12-0.460.342-0.180.118
13-0.8590.562-0.2670.055
Standard thresholds
P-value Threshold
0.001 5.25801
0.0005 5.79861
0.0001 6.78981