LYL1.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	LYL1.H12INVITRO.1.P.D
Gene (human)	LYL1 (GeneCards)
Gene synonyms (human)	BHLHA18
Gene (mouse)	Lyl1
Gene synonyms (mouse)	Lyl-1
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	15
Consensus	vMWbvWSYTTCCYbh
GC content	51.94%
Information content (bits; total / per base)	11.226 / 0.748
Data sources	ChIP-Seq
Aligned words	1032

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (14)	0.711	0.812	0.587	0.738	0.74	0.823	2.475	3.39	56.772	98.886

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	Tal-related {1.2.3} (TFClass)
TF subfamily	TAL-HEN {1.2.3.1} (TFClass)
TFClass ID	TFClass: 1.2.3.1.3
HGNC	HGNC:6734
MGI	MGI:96891
EntrezGene (human)	GeneID:4066 (SSTAR profile)
EntrezGene (mouse)	GeneID:17095 (SSTAR profile)
UniProt ID (human)	LYL1_HUMAN
UniProt ID (mouse)	LYL1_MOUSE
UniProt AC (human)	P12980 (TFClass)
UniProt AC (mouse)	P27792 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	LYL1.H12INVITRO.1.P.D.pcm
PWM	LYL1.H12INVITRO.1.P.D.pwm
PFM	LYL1.H12INVITRO.1.P.D.pfm
Alignment	LYL1.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	LYL1.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	LYL1.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	LYL1.H12INVITRO.1.P.D_meme_format.meme
Transfac format	LYL1.H12INVITRO.1.P.D_transfac_format.txt
Homer format	LYL1.H12INVITRO.1.P.D_homer_format_0.001.txt LYL1.H12INVITRO.1.P.D_homer_format_0.0005.txt LYL1.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	282.0	366.0	255.0	129.0
02	183.0	650.0	95.0	104.0
03	655.0	106.0	93.0	178.0
04	88.0	177.0	450.0	317.0
05	201.0	566.0	149.0	116.0
06	110.0	86.0	69.0	767.0
07	61.0	119.0	795.0	57.0
08	22.0	496.0	58.0	456.0
09	65.0	31.0	21.0	915.0
10	11.0	35.0	72.0	914.0
11	9.0	925.0	21.0	77.0
12	11.0	995.0	8.0	18.0
13	60.0	94.0	52.0	826.0
14	43.0	277.0	547.0	165.0
15	176.0	339.0	93.0	424.0

PFM

	A	C	G	T
01	0.273	0.355	0.247	0.125
02	0.177	0.63	0.092	0.101
03	0.635	0.103	0.09	0.172
04	0.085	0.172	0.436	0.307
05	0.195	0.548	0.144	0.112
06	0.107	0.083	0.067	0.743
07	0.059	0.115	0.77	0.055
08	0.021	0.481	0.056	0.442
09	0.063	0.03	0.02	0.887
10	0.011	0.034	0.07	0.886
11	0.009	0.896	0.02	0.075
12	0.011	0.964	0.008	0.017
13	0.058	0.091	0.05	0.8
14	0.042	0.268	0.53	0.16
15	0.171	0.328	0.09	0.411

PWM

	A	C	G	T
01	0.088	0.348	-0.012	-0.686
02	-0.341	0.92	-0.988	-0.899
03	0.928	-0.88	-1.009	-0.368
04	-1.063	-0.374	0.553	0.205
05	-0.248	0.782	-0.544	-0.791
06	-0.844	-1.085	-1.301	1.085
07	-1.421	-0.766	1.121	-1.487
08	-2.393	0.65	-1.47	0.567
09	-1.359	-2.071	-2.436	1.261
10	-3.015	-1.956	-1.259	1.26
11	-3.186	1.272	-2.436	-1.194
12	-3.015	1.345	-3.284	-2.577
13	-1.437	-0.998	-1.576	1.159
14	-1.759	0.071	0.748	-0.443
15	-0.379	0.271	-1.009	0.494

Standard thresholds

P-value	Threshold
0.001	4.43476
0.0005	5.30871
0.0001	7.13341