MotifLYL1.H12INVITRO.1.P.D
Gene (human)LYL1
(GeneCards)
Gene synonyms (human)BHLHA18
Gene (mouse)Lyl1
Gene synonyms (mouse)Lyl-1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length15
ConsensusvMWbvWSYTTCCYbh
GC content51.94%
Information content (bits; total / per base)11.226 / 0.748
Data sourcesChIP-Seq
Aligned words1032

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (14) 0.711 0.812 0.587 0.738 0.74 0.823 2.475 3.39 56.772 98.886
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTAL-HEN {1.2.3.1} (TFClass)
TFClass IDTFClass: 1.2.3.1.3
HGNCHGNC:6734
MGIMGI:96891
EntrezGene (human)GeneID:4066
(SSTAR profile)
EntrezGene (mouse)GeneID:17095
(SSTAR profile)
UniProt ID (human)LYL1_HUMAN
UniProt ID (mouse)LYL1_MOUSE
UniProt AC (human)P12980
(TFClass)
UniProt AC (mouse)P27792
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01282.0366.0255.0129.0
02183.0650.095.0104.0
03655.0106.093.0178.0
0488.0177.0450.0317.0
05201.0566.0149.0116.0
06110.086.069.0767.0
0761.0119.0795.057.0
0822.0496.058.0456.0
0965.031.021.0915.0
1011.035.072.0914.0
119.0925.021.077.0
1211.0995.08.018.0
1360.094.052.0826.0
1443.0277.0547.0165.0
15176.0339.093.0424.0
PFM
ACGT
010.2730.3550.2470.125
020.1770.630.0920.101
030.6350.1030.090.172
040.0850.1720.4360.307
050.1950.5480.1440.112
060.1070.0830.0670.743
070.0590.1150.770.055
080.0210.4810.0560.442
090.0630.030.020.887
100.0110.0340.070.886
110.0090.8960.020.075
120.0110.9640.0080.017
130.0580.0910.050.8
140.0420.2680.530.16
150.1710.3280.090.411
PWM
ACGT
010.0880.348-0.012-0.686
02-0.3410.92-0.988-0.899
030.928-0.88-1.009-0.368
04-1.063-0.3740.5530.205
05-0.2480.782-0.544-0.791
06-0.844-1.085-1.3011.085
07-1.421-0.7661.121-1.487
08-2.3930.65-1.470.567
09-1.359-2.071-2.4361.261
10-3.015-1.956-1.2591.26
11-3.1861.272-2.436-1.194
12-3.0151.345-3.284-2.577
13-1.437-0.998-1.5761.159
14-1.7590.0710.748-0.443
15-0.3790.271-1.0090.494
Standard thresholds
P-value Threshold
0.001 4.43476
0.0005 5.30871
0.0001 7.13341