| Motif | LYL1.H12INVITRO.0.P.D |
| Gene (human) | LYL1 (GeneCards) |
| Gene synonyms (human) | BHLHA18 |
| Gene (mouse) | Lyl1 |
| Gene synonyms (mouse) | Lyl-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | LYL1.H12INVITRO.0.P.D |
| Gene (human) | LYL1 (GeneCards) |
| Gene synonyms (human) | BHLHA18 |
| Gene (mouse) | Lyl1 |
| Gene synonyms (mouse) | Lyl-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 13 |
| Consensus | nvYhbCTGbbbnb |
| GC content | 53.51% |
| Information content (bits; total / per base) | 7.146 / 0.55 |
| Data sources | ChIP-Seq |
| Aligned words | 916 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (14) | 0.715 | 0.776 | 0.563 | 0.664 | 0.714 | 0.757 | 2.06 | 2.504 | 53.089 | 69.886 |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | Tal-related {1.2.3} (TFClass) |
| TF subfamily | TAL-HEN {1.2.3.1} (TFClass) |
| TFClass ID | TFClass: 1.2.3.1.3 |
| HGNC | HGNC:6734 |
| MGI | MGI:96891 |
| EntrezGene (human) | GeneID:4066 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:17095 (SSTAR profile) |
| UniProt ID (human) | LYL1_HUMAN |
| UniProt ID (mouse) | LYL1_MOUSE |
| UniProt AC (human) | P12980 (TFClass) |
| UniProt AC (mouse) | P27792 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | LYL1.H12INVITRO.0.P.D.pcm |
| PWM | LYL1.H12INVITRO.0.P.D.pwm |
| PFM | LYL1.H12INVITRO.0.P.D.pfm |
| Alignment | LYL1.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | LYL1.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | LYL1.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | LYL1.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | LYL1.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 271.0 | 245.0 | 264.0 | 136.0 |
| 02 | 284.0 | 369.0 | 132.0 | 131.0 |
| 03 | 157.0 | 533.0 | 45.0 | 181.0 |
| 04 | 476.0 | 101.0 | 98.0 | 241.0 |
| 05 | 54.0 | 165.0 | 256.0 | 441.0 |
| 06 | 1.0 | 859.0 | 29.0 | 27.0 |
| 07 | 3.0 | 4.0 | 0.0 | 909.0 |
| 08 | 2.0 | 26.0 | 860.0 | 28.0 |
| 09 | 22.0 | 350.0 | 209.0 | 335.0 |
| 10 | 149.0 | 193.0 | 185.0 | 389.0 |
| 11 | 151.0 | 157.0 | 200.0 | 408.0 |
| 12 | 144.0 | 323.0 | 191.0 | 258.0 |
| 13 | 96.0 | 403.0 | 175.0 | 242.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.296 | 0.267 | 0.288 | 0.148 |
| 02 | 0.31 | 0.403 | 0.144 | 0.143 |
| 03 | 0.171 | 0.582 | 0.049 | 0.198 |
| 04 | 0.52 | 0.11 | 0.107 | 0.263 |
| 05 | 0.059 | 0.18 | 0.279 | 0.481 |
| 06 | 0.001 | 0.938 | 0.032 | 0.029 |
| 07 | 0.003 | 0.004 | 0.0 | 0.992 |
| 08 | 0.002 | 0.028 | 0.939 | 0.031 |
| 09 | 0.024 | 0.382 | 0.228 | 0.366 |
| 10 | 0.163 | 0.211 | 0.202 | 0.425 |
| 11 | 0.165 | 0.171 | 0.218 | 0.445 |
| 12 | 0.157 | 0.353 | 0.209 | 0.282 |
| 13 | 0.105 | 0.44 | 0.191 | 0.264 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.167 | 0.067 | 0.141 | -0.516 |
| 02 | 0.214 | 0.474 | -0.546 | -0.553 |
| 03 | -0.374 | 0.841 | -1.597 | -0.233 |
| 04 | 0.728 | -0.809 | -0.839 | 0.051 |
| 05 | -1.421 | -0.325 | 0.111 | 0.652 |
| 06 | -4.446 | 1.317 | -2.017 | -2.084 |
| 07 | -3.893 | -3.7 | -4.908 | 1.373 |
| 08 | -4.131 | -2.12 | 1.318 | -2.05 |
| 09 | -2.275 | 0.422 | -0.091 | 0.378 |
| 10 | -0.426 | -0.17 | -0.212 | 0.527 |
| 11 | -0.413 | -0.374 | -0.134 | 0.574 |
| 12 | -0.46 | 0.342 | -0.18 | 0.118 |
| 13 | -0.859 | 0.562 | -0.267 | 0.055 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.25801 |
| 0.0005 | 5.79861 |
| 0.0001 | 6.78981 |