MotifLRRF1.H12INVIVO.0.P.B
Gene (human)LRRFIP1
(GeneCards)
Gene synonyms (human)GCF2, TRIP
Gene (mouse)Lrrfip1
Gene synonyms (mouse)Flap
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length10
ConsensusRRGCTCGSbn
GC content70.39%
Information content (bits; total / per base)9.569 / 0.957
Data sourcesChIP-Seq
Aligned words285

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (10) 0.801 0.834 0.684 0.738 0.652 0.714 1.705 2.064 43.056 158.337
TF superclassYet undefined DNA-binding domains {0} (TFClass)
TF classLeucine-rich repeat flightless-interacting proteins {0.3} (TFClass)
TF familyLRRFIP {0.3.1} (TFClass)
TF subfamily {0.3.1.0} (TFClass)
TFClass IDTFClass: 0.3.1.0.1
HGNCHGNC:6702
MGIMGI:1342770
EntrezGene (human)GeneID:9208
(SSTAR profile)
EntrezGene (mouse)GeneID:16978
(SSTAR profile)
UniProt ID (human)LRRF1_HUMAN
UniProt ID (mouse)LRRF1_MOUSE
UniProt AC (human)Q32MZ4
(TFClass)
UniProt AC (mouse)Q3UZ39
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01118.045.0116.06.0
02139.07.0136.03.0
039.02.0263.011.0
044.0245.05.031.0
050.019.09.0257.0
064.0272.05.04.0
074.03.0243.035.0
087.0204.067.07.0
0934.0152.063.036.0
1058.063.087.077.0
PFM
ACGT
010.4140.1580.4070.021
020.4880.0250.4770.011
030.0320.0070.9230.039
040.0140.860.0180.109
050.00.0670.0320.902
060.0140.9540.0180.014
070.0140.0110.8530.123
080.0250.7160.2350.025
090.1190.5330.2210.126
100.2040.2210.3050.27
PWM
ACGT
010.497-0.4480.48-2.283
020.659-2.1560.637-2.801
03-1.943-3.0581.292-1.767
04-2.5971.221-2.427-0.807
05-3.94-1.27-1.9431.269
06-2.5971.325-2.427-2.597
07-2.597-2.8011.213-0.691
08-2.1561.039-0.06-2.156
09-0.7190.747-0.121-0.664
10-0.201-0.1210.1960.076
Standard thresholds
P-value Threshold
0.001 4.86427
0.0005 5.627545
0.0001 7.41301