| Motif | LRRF1.H12INVITRO.0.P.D |
| Gene (human) | LRRFIP1 (GeneCards) |
| Gene synonyms (human) | GCF2, TRIP |
| Gene (mouse) | Lrrfip1 |
| Gene synonyms (mouse) | Flap |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | LRRF1.H12INVITRO.0.P.D |
| Gene (human) | LRRFIP1 (GeneCards) |
| Gene synonyms (human) | GCF2, TRIP |
| Gene (mouse) | Lrrfip1 |
| Gene synonyms (mouse) | Flap |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | RRGCTCGSbn |
| GC content | 70.39% |
| Information content (bits; total / per base) | 9.569 / 0.957 |
| Data sources | ChIP-Seq |
| Aligned words | 285 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 2 (10) | 0.801 | 0.834 | 0.684 | 0.738 | 0.652 | 0.714 | 1.705 | 2.064 | 43.056 | 158.337 |
| TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
| TF class | Leucine-rich repeat flightless-interacting proteins {0.3} (TFClass) |
| TF family | LRRFIP {0.3.1} (TFClass) |
| TF subfamily | {0.3.1.0} (TFClass) |
| TFClass ID | TFClass: 0.3.1.0.1 |
| HGNC | HGNC:6702 |
| MGI | MGI:1342770 |
| EntrezGene (human) | GeneID:9208 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:16978 (SSTAR profile) |
| UniProt ID (human) | LRRF1_HUMAN |
| UniProt ID (mouse) | LRRF1_MOUSE |
| UniProt AC (human) | Q32MZ4 (TFClass) |
| UniProt AC (mouse) | Q3UZ39 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 2 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | LRRF1.H12INVITRO.0.P.D.pcm |
| PWM | LRRF1.H12INVITRO.0.P.D.pwm |
| PFM | LRRF1.H12INVITRO.0.P.D.pfm |
| Alignment | LRRF1.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | LRRF1.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | LRRF1.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | LRRF1.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | LRRF1.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 118.0 | 45.0 | 116.0 | 6.0 |
| 02 | 139.0 | 7.0 | 136.0 | 3.0 |
| 03 | 9.0 | 2.0 | 263.0 | 11.0 |
| 04 | 4.0 | 245.0 | 5.0 | 31.0 |
| 05 | 0.0 | 19.0 | 9.0 | 257.0 |
| 06 | 4.0 | 272.0 | 5.0 | 4.0 |
| 07 | 4.0 | 3.0 | 243.0 | 35.0 |
| 08 | 7.0 | 204.0 | 67.0 | 7.0 |
| 09 | 34.0 | 152.0 | 63.0 | 36.0 |
| 10 | 58.0 | 63.0 | 87.0 | 77.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.414 | 0.158 | 0.407 | 0.021 |
| 02 | 0.488 | 0.025 | 0.477 | 0.011 |
| 03 | 0.032 | 0.007 | 0.923 | 0.039 |
| 04 | 0.014 | 0.86 | 0.018 | 0.109 |
| 05 | 0.0 | 0.067 | 0.032 | 0.902 |
| 06 | 0.014 | 0.954 | 0.018 | 0.014 |
| 07 | 0.014 | 0.011 | 0.853 | 0.123 |
| 08 | 0.025 | 0.716 | 0.235 | 0.025 |
| 09 | 0.119 | 0.533 | 0.221 | 0.126 |
| 10 | 0.204 | 0.221 | 0.305 | 0.27 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.497 | -0.448 | 0.48 | -2.283 |
| 02 | 0.659 | -2.156 | 0.637 | -2.801 |
| 03 | -1.943 | -3.058 | 1.292 | -1.767 |
| 04 | -2.597 | 1.221 | -2.427 | -0.807 |
| 05 | -3.94 | -1.27 | -1.943 | 1.269 |
| 06 | -2.597 | 1.325 | -2.427 | -2.597 |
| 07 | -2.597 | -2.801 | 1.213 | -0.691 |
| 08 | -2.156 | 1.039 | -0.06 | -2.156 |
| 09 | -0.719 | 0.747 | -0.121 | -0.664 |
| 10 | -0.201 | -0.121 | 0.196 | 0.076 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.86427 |
| 0.0005 | 5.627545 |
| 0.0001 | 7.41301 |