| Motif | LHX3.H12INVITRO.0.P.D |
| Gene (human) | LHX3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Lhx3 |
| Gene synonyms (mouse) | Lim-3, Lim3, Plim |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | LHX3.H12INVITRO.0.P.D |
| Gene (human) | LHX3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Lhx3 |
| Gene synonyms (mouse) | Lim-3, Lim3, Plim |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | MWKYAATTAR |
| GC content | 21.93% |
| Information content (bits; total / per base) | 10.733 / 1.073 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 12 (80) | 0.873 | 0.915 | 0.75 | 0.828 | 0.835 | 0.869 | 2.639 | 2.882 | 122.535 | 170.0 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HD-LIM {3.1.5} (TFClass) |
| TF subfamily | LHX3-like {3.1.5.4} (TFClass) |
| TFClass ID | TFClass: 3.1.5.4.1 |
| HGNC | HGNC:6595 |
| MGI | MGI:102673 |
| EntrezGene (human) | GeneID:8022 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:16871 (SSTAR profile) |
| UniProt ID (human) | LHX3_HUMAN |
| UniProt ID (mouse) | LHX3_MOUSE |
| UniProt AC (human) | Q9UBR4 (TFClass) |
| UniProt AC (mouse) | P50481 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 12 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | LHX3.H12INVITRO.0.P.D.pcm |
| PWM | LHX3.H12INVITRO.0.P.D.pwm |
| PFM | LHX3.H12INVITRO.0.P.D.pfm |
| Alignment | LHX3.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | LHX3.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | LHX3.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | LHX3.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | LHX3.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 702.0 | 132.0 | 37.0 | 130.0 |
| 02 | 339.0 | 19.0 | 155.0 | 488.0 |
| 03 | 18.0 | 176.0 | 262.0 | 545.0 |
| 04 | 24.0 | 355.0 | 6.0 | 616.0 |
| 05 | 773.0 | 199.0 | 23.0 | 6.0 |
| 06 | 938.0 | 52.0 | 4.0 | 7.0 |
| 07 | 2.0 | 3.0 | 2.0 | 994.0 |
| 08 | 4.0 | 94.0 | 2.0 | 901.0 |
| 09 | 960.0 | 1.0 | 6.0 | 34.0 |
| 10 | 300.0 | 141.0 | 526.0 | 34.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.701 | 0.132 | 0.037 | 0.13 |
| 02 | 0.339 | 0.019 | 0.155 | 0.488 |
| 03 | 0.018 | 0.176 | 0.262 | 0.544 |
| 04 | 0.024 | 0.355 | 0.006 | 0.615 |
| 05 | 0.772 | 0.199 | 0.023 | 0.006 |
| 06 | 0.937 | 0.052 | 0.004 | 0.007 |
| 07 | 0.002 | 0.003 | 0.002 | 0.993 |
| 08 | 0.004 | 0.094 | 0.002 | 0.9 |
| 09 | 0.959 | 0.001 | 0.006 | 0.034 |
| 10 | 0.3 | 0.141 | 0.525 | 0.034 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.027 | -0.634 | -1.873 | -0.649 |
| 02 | 0.302 | -2.498 | -0.475 | 0.665 |
| 03 | -2.547 | -0.349 | 0.046 | 0.775 |
| 04 | -2.282 | 0.348 | -3.485 | 0.897 |
| 05 | 1.123 | -0.227 | -2.321 | -3.485 |
| 06 | 1.316 | -1.545 | -3.784 | -3.363 |
| 07 | -4.214 | -3.976 | -4.214 | 1.374 |
| 08 | -3.784 | -0.968 | -4.214 | 1.276 |
| 09 | 1.339 | -4.526 | -3.485 | -1.953 |
| 10 | 0.18 | -0.568 | 0.739 | -1.953 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.530755 |
| 0.0005 | 5.520775 |
| 0.0001 | 7.50721 |