MotifLHX3.H12CORE.0.P.B
Gene (human)LHX3
(GeneCards)
Gene synonyms (human)
Gene (mouse)Lhx3
Gene synonyms (mouse)Lim-3, Lim3, Plim
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length10
ConsensusMWKYAATTAR
GC content21.93%
Information content (bits; total / per base)10.733 / 1.073
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 12 (80) 0.873 0.915 0.75 0.828 0.835 0.869 2.639 2.882 122.535 170.0
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHD-LIM {3.1.5} (TFClass)
TF subfamilyLHX3-like {3.1.5.4} (TFClass)
TFClass IDTFClass: 3.1.5.4.1
HGNCHGNC:6595
MGIMGI:102673
EntrezGene (human)GeneID:8022
(SSTAR profile)
EntrezGene (mouse)GeneID:16871
(SSTAR profile)
UniProt ID (human)LHX3_HUMAN
UniProt ID (mouse)LHX3_MOUSE
UniProt AC (human)Q9UBR4
(TFClass)
UniProt AC (mouse)P50481
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 12 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01702.0132.037.0130.0
02339.019.0155.0488.0
0318.0176.0262.0545.0
0424.0355.06.0616.0
05773.0199.023.06.0
06938.052.04.07.0
072.03.02.0994.0
084.094.02.0901.0
09960.01.06.034.0
10300.0141.0526.034.0
PFM
ACGT
010.7010.1320.0370.13
020.3390.0190.1550.488
030.0180.1760.2620.544
040.0240.3550.0060.615
050.7720.1990.0230.006
060.9370.0520.0040.007
070.0020.0030.0020.993
080.0040.0940.0020.9
090.9590.0010.0060.034
100.30.1410.5250.034
PWM
ACGT
011.027-0.634-1.873-0.649
020.302-2.498-0.4750.665
03-2.547-0.3490.0460.775
04-2.2820.348-3.4850.897
051.123-0.227-2.321-3.485
061.316-1.545-3.784-3.363
07-4.214-3.976-4.2141.374
08-3.784-0.968-4.2141.276
091.339-4.526-3.485-1.953
100.18-0.5680.739-1.953
Standard thresholds
P-value Threshold
0.001 4.530755
0.0005 5.520775
0.0001 7.50721