| Motif | LHX1.H12INVIVO.1.M.D |
| Gene (human) | LHX1 (GeneCards) |
| Gene synonyms (human) | LIM-1, LIM1 |
| Gene (mouse) | Lhx1 |
| Gene synonyms (mouse) | Lim-1, Lim1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | LHX1.H12INVIVO.1.M.D |
| Gene (human) | LHX1 (GeneCards) |
| Gene synonyms (human) | LIM-1, LIM1 |
| Gene (mouse) | Lhx1 |
| Gene synonyms (mouse) | Lim-1, Lim1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 10 |
| Consensus | nSbTAACGMn |
| GC content | 43.71% |
| Information content (bits; total / per base) | 10.098 / 1.01 |
| Data sources | Methyl-HT-SELEX |
| Aligned words | 4814 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.801 | 0.726 | 0.774 | 0.703 | 0.726 | 0.67 |
| best | 0.844 | 0.776 | 0.8 | 0.737 | 0.74 | 0.691 | |
| Methyl HT-SELEX, 1 experiments | median | 0.844 | 0.776 | 0.8 | 0.737 | 0.74 | 0.691 |
| best | 0.844 | 0.776 | 0.8 | 0.737 | 0.74 | 0.691 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.759 | 0.676 | 0.747 | 0.669 | 0.712 | 0.648 |
| best | 0.759 | 0.676 | 0.747 | 0.669 | 0.712 | 0.648 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HD-LIM {3.1.5} (TFClass) |
| TF subfamily | LHX1-like {3.1.5.2} (TFClass) |
| TFClass ID | TFClass: 3.1.5.2.1 |
| HGNC | HGNC:6593 |
| MGI | MGI:99783 |
| EntrezGene (human) | GeneID:3975 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:16869 (SSTAR profile) |
| UniProt ID (human) | LHX1_HUMAN |
| UniProt ID (mouse) | LHX1_MOUSE |
| UniProt AC (human) | P48742 (TFClass) |
| UniProt AC (mouse) | P63006 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | LHX1.H12INVIVO.1.M.D.pcm |
| PWM | LHX1.H12INVIVO.1.M.D.pwm |
| PFM | LHX1.H12INVIVO.1.M.D.pfm |
| Alignment | LHX1.H12INVIVO.1.M.D.words.tsv |
| Threshold to P-value map | LHX1.H12INVIVO.1.M.D.thr |
| Motif in other formats | |
| JASPAR format | LHX1.H12INVIVO.1.M.D_jaspar_format.txt |
| MEME format | LHX1.H12INVIVO.1.M.D_meme_format.meme |
| Transfac format | LHX1.H12INVIVO.1.M.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1516.25 | 1229.25 | 1076.25 | 992.25 |
| 02 | 623.5 | 2309.5 | 1724.5 | 156.5 |
| 03 | 398.0 | 1209.0 | 1917.0 | 1290.0 |
| 04 | 0.0 | 0.0 | 0.0 | 4814.0 |
| 05 | 4814.0 | 0.0 | 0.0 | 0.0 |
| 06 | 4814.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 3322.0 | 0.0 | 1492.0 |
| 08 | 0.0 | 13.0 | 4494.0 | 307.0 |
| 09 | 3428.75 | 717.75 | 471.75 | 195.75 |
| 10 | 1048.5 | 935.5 | 1620.5 | 1209.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.315 | 0.255 | 0.224 | 0.206 |
| 02 | 0.13 | 0.48 | 0.358 | 0.033 |
| 03 | 0.083 | 0.251 | 0.398 | 0.268 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.69 | 0.0 | 0.31 |
| 08 | 0.0 | 0.003 | 0.934 | 0.064 |
| 09 | 0.712 | 0.149 | 0.098 | 0.041 |
| 10 | 0.218 | 0.194 | 0.337 | 0.251 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.231 | 0.021 | -0.112 | -0.193 |
| 02 | -0.656 | 0.651 | 0.359 | -2.028 |
| 03 | -1.103 | 0.005 | 0.465 | 0.069 |
| 04 | -6.343 | -6.343 | -6.343 | 1.385 |
| 05 | 1.385 | -6.343 | -6.343 | -6.343 |
| 06 | 1.385 | -6.343 | -6.343 | -6.343 |
| 07 | -6.343 | 1.014 | -6.343 | 0.215 |
| 08 | -6.343 | -4.379 | 1.316 | -1.361 |
| 09 | 1.046 | -0.516 | -0.934 | -1.807 |
| 10 | -0.138 | -0.251 | 0.297 | 0.005 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.120045 |
| 0.0005 | 6.049325 |
| 0.0001 | 7.710405 |