| Motif | LHX1.H12INVIVO.0.S.D |
| Gene (human) | LHX1 (GeneCards) |
| Gene synonyms (human) | LIM-1, LIM1 |
| Gene (mouse) | Lhx1 |
| Gene synonyms (mouse) | Lim-1, Lim1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | LHX1.H12INVIVO.0.S.D |
| Gene (human) | LHX1 (GeneCards) |
| Gene synonyms (human) | LIM-1, LIM1 |
| Gene (mouse) | Lhx1 |
| Gene synonyms (mouse) | Lim-1, Lim1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | nvbTAATKRnn |
| GC content | 33.84% |
| Information content (bits; total / per base) | 9.44 / 0.858 |
| Data sources | HT-SELEX |
| Aligned words | 9612 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.863 | 0.801 | 0.817 | 0.759 | 0.752 | 0.707 |
| best | 0.899 | 0.846 | 0.852 | 0.799 | 0.781 | 0.739 | |
| Methyl HT-SELEX, 1 experiments | median | 0.826 | 0.755 | 0.783 | 0.718 | 0.723 | 0.675 |
| best | 0.826 | 0.755 | 0.783 | 0.718 | 0.723 | 0.675 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.899 | 0.846 | 0.852 | 0.799 | 0.781 | 0.739 |
| best | 0.899 | 0.846 | 0.852 | 0.799 | 0.781 | 0.739 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HD-LIM {3.1.5} (TFClass) |
| TF subfamily | LHX1-like {3.1.5.2} (TFClass) |
| TFClass ID | TFClass: 3.1.5.2.1 |
| HGNC | HGNC:6593 |
| MGI | MGI:99783 |
| EntrezGene (human) | GeneID:3975 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:16869 (SSTAR profile) |
| UniProt ID (human) | LHX1_HUMAN |
| UniProt ID (mouse) | LHX1_MOUSE |
| UniProt AC (human) | P48742 (TFClass) |
| UniProt AC (mouse) | P63006 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | LHX1.H12INVIVO.0.S.D.pcm |
| PWM | LHX1.H12INVIVO.0.S.D.pwm |
| PFM | LHX1.H12INVIVO.0.S.D.pfm |
| Alignment | LHX1.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | LHX1.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | LHX1.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | LHX1.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | LHX1.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2424.0 | 2872.0 | 2300.0 | 2016.0 |
| 02 | 2089.0 | 2881.0 | 3886.0 | 756.0 |
| 03 | 793.0 | 2508.0 | 2957.0 | 3354.0 |
| 04 | 0.0 | 96.0 | 0.0 | 9516.0 |
| 05 | 9612.0 | 0.0 | 0.0 | 0.0 |
| 06 | 9612.0 | 0.0 | 0.0 | 0.0 |
| 07 | 3.0 | 42.0 | 0.0 | 9567.0 |
| 08 | 155.0 | 1498.0 | 1561.0 | 6398.0 |
| 09 | 4936.0 | 606.0 | 3538.0 | 532.0 |
| 10 | 1730.0 | 3384.0 | 2732.0 | 1766.0 |
| 11 | 2313.75 | 2229.75 | 2687.75 | 2380.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.252 | 0.299 | 0.239 | 0.21 |
| 02 | 0.217 | 0.3 | 0.404 | 0.079 |
| 03 | 0.083 | 0.261 | 0.308 | 0.349 |
| 04 | 0.0 | 0.01 | 0.0 | 0.99 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.004 | 0.0 | 0.995 |
| 08 | 0.016 | 0.156 | 0.162 | 0.666 |
| 09 | 0.514 | 0.063 | 0.368 | 0.055 |
| 10 | 0.18 | 0.352 | 0.284 | 0.184 |
| 11 | 0.241 | 0.232 | 0.28 | 0.248 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.009 | 0.178 | -0.044 | -0.175 |
| 02 | -0.14 | 0.181 | 0.48 | -1.154 |
| 03 | -1.107 | 0.043 | 0.207 | 0.333 |
| 04 | -6.956 | -3.197 | -6.956 | 1.376 |
| 05 | 1.386 | -6.956 | -6.956 | -6.956 |
| 06 | 1.386 | -6.956 | -6.956 | -6.956 |
| 07 | -6.119 | -3.995 | -6.956 | 1.381 |
| 08 | -2.727 | -0.472 | -0.431 | 0.979 |
| 09 | 0.719 | -1.375 | 0.387 | -1.504 |
| 10 | -0.328 | 0.342 | 0.128 | -0.308 |
| 11 | -0.038 | -0.075 | 0.112 | -0.009 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.511095 |
| 0.0005 | 6.225525 |
| 0.0001 | 7.542285 |