MotifLHX1.H12INVITRO.1.M.C
Gene (human)LHX1
(GeneCards)
Gene synonyms (human)LIM-1, LIM1
Gene (mouse)Lhx1
Gene synonyms (mouse)Lim-1, Lim1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length10
ConsensusnSbTAACGMn
GC content43.71%
Information content (bits; total / per base)10.098 / 1.01
Data sourcesMethyl-HT-SELEX
Aligned words4814

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.801 0.726 0.774 0.703 0.726 0.67
best 0.844 0.776 0.8 0.737 0.74 0.691
Methyl HT-SELEX, 1 experiments median 0.844 0.776 0.8 0.737 0.74 0.691
best 0.844 0.776 0.8 0.737 0.74 0.691
Non-Methyl HT-SELEX, 1 experiments median 0.759 0.676 0.747 0.669 0.712 0.648
best 0.759 0.676 0.747 0.669 0.712 0.648
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHD-LIM {3.1.5} (TFClass)
TF subfamilyLHX1-like {3.1.5.2} (TFClass)
TFClass IDTFClass: 3.1.5.2.1
HGNCHGNC:6593
MGIMGI:99783
EntrezGene (human)GeneID:3975
(SSTAR profile)
EntrezGene (mouse)GeneID:16869
(SSTAR profile)
UniProt ID (human)LHX1_HUMAN
UniProt ID (mouse)LHX1_MOUSE
UniProt AC (human)P48742
(TFClass)
UniProt AC (mouse)P63006
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011516.251229.251076.25992.25
02623.52309.51724.5156.5
03398.01209.01917.01290.0
040.00.00.04814.0
054814.00.00.00.0
064814.00.00.00.0
070.03322.00.01492.0
080.013.04494.0307.0
093428.75717.75471.75195.75
101048.5935.51620.51209.5
PFM
ACGT
010.3150.2550.2240.206
020.130.480.3580.033
030.0830.2510.3980.268
040.00.00.01.0
051.00.00.00.0
061.00.00.00.0
070.00.690.00.31
080.00.0030.9340.064
090.7120.1490.0980.041
100.2180.1940.3370.251
PWM
ACGT
010.2310.021-0.112-0.193
02-0.6560.6510.359-2.028
03-1.1030.0050.4650.069
04-6.343-6.343-6.3431.385
051.385-6.343-6.343-6.343
061.385-6.343-6.343-6.343
07-6.3431.014-6.3430.215
08-6.343-4.3791.316-1.361
091.046-0.516-0.934-1.807
10-0.138-0.2510.2970.005
Standard thresholds
P-value Threshold
0.001 5.120045
0.0005 6.049325
0.0001 7.710405