MotifLBX2.H12INVIVO.0.S.D
Gene (human)LBX2
(GeneCards)
Gene synonyms (human)
Gene (mouse)Lbx2
Gene synonyms (mouse)Lbx2h
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length14
ConsensusnvnCTAATTARYdn
GC content34.42%
Information content (bits; total / per base)13.86 / 0.99
Data sourcesHT-SELEX
Aligned words8874

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.968 0.953 0.904 0.889 0.775 0.78
best 0.995 0.992 0.991 0.986 0.976 0.968
Methyl HT-SELEX, 1 experiments median 0.652 0.631 0.574 0.572 0.538 0.543
best 0.652 0.631 0.574 0.572 0.538 0.543
Non-Methyl HT-SELEX, 3 experiments median 0.99 0.984 0.969 0.958 0.846 0.85
best 0.995 0.992 0.991 0.986 0.976 0.968
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyLBX {3.1.2.10} (TFClass)
TFClass IDTFClass: 3.1.2.10.2
HGNCHGNC:15525
MGIMGI:1342288
EntrezGene (human)GeneID:85474
(SSTAR profile)
EntrezGene (mouse)GeneID:16815
(SSTAR profile)
UniProt ID (human)LBX2_HUMAN
UniProt ID (mouse)LBX2_MOUSE
UniProt AC (human)Q6XYB7
(TFClass)
UniProt AC (mouse)Q9WUN8
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012577.751673.752450.752171.75
022874.51747.53182.51069.5
032664.02564.02327.01319.0
0473.08003.0317.0481.0
052.03532.00.05340.0
068825.045.04.00.0
078874.00.00.00.0
080.00.00.08874.0
090.00.00.08874.0
108872.00.02.00.0
114391.0193.03987.0303.0
12295.03594.01067.03918.0
131686.01050.03290.02848.0
143398.252004.251722.251749.25
PFM
ACGT
010.290.1890.2760.245
020.3240.1970.3590.121
030.30.2890.2620.149
040.0080.9020.0360.054
050.00.3980.00.602
060.9940.0050.00.0
071.00.00.00.0
080.00.00.01.0
090.00.00.01.0
101.00.00.00.0
110.4950.0220.4490.034
120.0330.4050.120.442
130.190.1180.3710.321
140.3830.2260.1940.197
PWM
ACGT
010.15-0.2810.099-0.021
020.259-0.2380.361-0.729
030.1830.1450.048-0.519
04-3.3841.282-1.94-1.525
05-6.2530.465-6.8850.878
061.38-3.85-5.869-6.885
071.386-6.885-6.885-6.885
08-6.885-6.885-6.8851.386
09-6.885-6.885-6.8851.386
101.385-6.885-6.253-6.885
110.682-2.4310.586-1.984
12-2.0110.482-0.7310.568
13-0.274-0.7470.3940.25
140.426-0.101-0.253-0.237
Standard thresholds
P-value Threshold
0.001 1.05891
0.0005 2.62636
0.0001 6.904065