KLF9.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF9.H12INVIVO.1.P.B
Gene (human)	KLF9 (GeneCards)
Gene synonyms (human)	BTEB, BTEB1
Gene (mouse)	Klf9
Gene synonyms (mouse)	Bteb, Bteb-1, Bteb1
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	21
Consensus	vSSvvRGGGGCGGGGMbbSSS
GC content	82.85%
Information content (bits; total / per base)	20.211 / 0.962
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (32)	0.776	0.859	0.622	0.732	0.824	0.95	3.898	4.902	101.532	277.585

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.524	0.535	0.052	0.033

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.9
HGNC	HGNC:1123
MGI	MGI:1333856
EntrezGene (human)	GeneID:687 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	KLF9_HUMAN
UniProt ID (mouse)	KLF9_MOUSE
UniProt AC (human)	Q13886 (TFClass)
UniProt AC (mouse)	O35739 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KLF9.H12INVIVO.1.P.B.pcm
PWM	KLF9.H12INVIVO.1.P.B.pwm
PFM	KLF9.H12INVIVO.1.P.B.pfm
Alignment	KLF9.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	KLF9.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	KLF9.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	KLF9.H12INVIVO.1.P.B_meme_format.meme
Transfac format	KLF9.H12INVIVO.1.P.B_transfac_format.txt
Homer format	KLF9.H12INVIVO.1.P.B_homer_format_0.001.txt KLF9.H12INVIVO.1.P.B_homer_format_0.0005.txt KLF9.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	140.0	241.0	562.0	57.0
02	118.0	154.0	626.0	102.0
03	92.0	139.0	716.0	53.0
04	199.0	196.0	537.0	68.0
05	467.0	133.0	290.0	110.0
06	221.0	46.0	716.0	17.0
07	54.0	3.0	792.0	151.0
08	45.0	9.0	943.0	3.0
09	2.0	4.0	993.0	1.0
10	4.0	5.0	989.0	2.0
11	66.0	887.0	1.0	46.0
12	4.0	3.0	984.0	9.0
13	3.0	10.0	763.0	224.0
14	20.0	8.0	968.0	4.0
15	25.0	14.0	938.0	23.0
16	101.0	765.0	83.0	51.0
17	92.0	492.0	277.0	139.0
18	149.0	170.0	528.0	153.0
19	167.0	181.0	600.0	52.0
20	118.0	143.0	686.0	53.0
21	169.0	209.0	595.0	27.0

PFM

	A	C	G	T
01	0.14	0.241	0.562	0.057
02	0.118	0.154	0.626	0.102
03	0.092	0.139	0.716	0.053
04	0.199	0.196	0.537	0.068
05	0.467	0.133	0.29	0.11
06	0.221	0.046	0.716	0.017
07	0.054	0.003	0.792	0.151
08	0.045	0.009	0.943	0.003
09	0.002	0.004	0.993	0.001
10	0.004	0.005	0.989	0.002
11	0.066	0.887	0.001	0.046
12	0.004	0.003	0.984	0.009
13	0.003	0.01	0.763	0.224
14	0.02	0.008	0.968	0.004
15	0.025	0.014	0.938	0.023
16	0.101	0.765	0.083	0.051
17	0.092	0.492	0.277	0.139
18	0.149	0.17	0.528	0.153
19	0.167	0.181	0.6	0.052
20	0.118	0.143	0.686	0.053
21	0.169	0.209	0.595	0.027

PWM

	A	C	G	T
01	-0.574	-0.036	0.806	-1.455
02	-0.743	-0.48	0.914	-0.887
03	-0.988	-0.582	1.048	-1.526
04	-0.226	-0.241	0.761	-1.284
05	0.622	-0.625	0.147	-0.812
06	-0.122	-1.663	1.048	-2.598
07	-1.508	-3.975	1.148	-0.5
08	-1.684	-3.156	1.323	-3.975
09	-4.213	-3.783	1.374	-4.525
10	-3.783	-3.622	1.37	-4.213
11	-1.313	1.261	-4.525	-1.663
12	-3.783	-3.975	1.365	-3.156
13	-3.975	-3.066	1.111	-0.109
14	-2.45	-3.253	1.349	-3.783
15	-2.243	-2.773	1.317	-2.32
16	-0.896	1.114	-1.089	-1.563
17	-0.988	0.674	0.102	-0.582
18	-0.513	-0.382	0.744	-0.487
19	-0.4	-0.32	0.871	-1.544
20	-0.743	-0.553	1.005	-1.526
21	-0.388	-0.178	0.863	-2.171

Standard thresholds

P-value	Threshold
0.001	0.39736
0.0005	1.81416
0.0001	4.80841