KLF9.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF9.H12INVIVO.0.P.B
Gene (human)	KLF9 (GeneCards)
Gene synonyms (human)	BTEB, BTEB1
Gene (mouse)	Klf9
Gene synonyms (mouse)	Bteb, Bteb-1, Bteb1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	14
Consensus	vvRKGGGYGTGKCb
GC content	75.04%
Information content (bits; total / per base)	15.866 / 1.133
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (32)	0.882	0.967	0.814	0.915	0.891	0.98	4.3	5.249	199.347	676.77

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.687	2.909	0.134	0.057

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.9
HGNC	HGNC:1123
MGI	MGI:1333856
EntrezGene (human)	GeneID:687 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	KLF9_HUMAN
UniProt ID (mouse)	KLF9_MOUSE
UniProt AC (human)	Q13886 (TFClass)
UniProt AC (mouse)	O35739 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KLF9.H12INVIVO.0.P.B.pcm
PWM	KLF9.H12INVIVO.0.P.B.pwm
PFM	KLF9.H12INVIVO.0.P.B.pfm
Alignment	KLF9.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	KLF9.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	KLF9.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	KLF9.H12INVIVO.0.P.B_meme_format.meme
Transfac format	KLF9.H12INVIVO.0.P.B_transfac_format.txt
Homer format	KLF9.H12INVIVO.0.P.B_homer_format_0.001.txt KLF9.H12INVIVO.0.P.B_homer_format_0.0005.txt KLF9.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	307.0	137.0	445.0	111.0
02	396.0	125.0	377.0	102.0
03	167.0	43.0	771.0	19.0
04	46.0	0.0	525.0	429.0
05	12.0	0.0	988.0	0.0
06	0.0	0.0	1000.0	0.0
07	0.0	1.0	999.0	0.0
08	16.0	648.0	0.0	336.0
09	0.0	0.0	1000.0	0.0
10	0.0	21.0	189.0	790.0
11	3.0	1.0	990.0	6.0
12	52.0	97.0	648.0	203.0
13	26.0	797.0	52.0	125.0
14	147.0	455.0	196.0	202.0

PFM

	A	C	G	T
01	0.307	0.137	0.445	0.111
02	0.396	0.125	0.377	0.102
03	0.167	0.043	0.771	0.019
04	0.046	0.0	0.525	0.429
05	0.012	0.0	0.988	0.0
06	0.0	0.0	1.0	0.0
07	0.0	0.001	0.999	0.0
08	0.016	0.648	0.0	0.336
09	0.0	0.0	1.0	0.0
10	0.0	0.021	0.189	0.79
11	0.003	0.001	0.99	0.006
12	0.052	0.097	0.648	0.203
13	0.026	0.797	0.052	0.125
14	0.147	0.455	0.196	0.202

PWM

	A	C	G	T
01	0.204	-0.596	0.574	-0.803
02	0.457	-0.686	0.408	-0.887
03	-0.4	-1.728	1.122	-2.497
04	-1.663	-4.982	0.738	0.537
05	-2.909	-4.982	1.369	-4.982
06	-4.982	-4.982	1.381	-4.982
07	-4.982	-4.525	1.38	-4.982
08	-2.653	0.948	-4.982	0.294
09	-4.982	-4.982	1.381	-4.982
10	-4.982	-2.405	-0.278	1.146
11	-3.975	-4.525	1.371	-3.484
12	-1.544	-0.936	0.948	-0.207
13	-2.206	1.155	-1.544	-0.686
14	-0.526	0.596	-0.241	-0.212

Standard thresholds

P-value	Threshold
0.001	1.57611
0.0005	3.03881
0.0001	6.09661