KLF9.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF9.H12INVITRO.1.P.D
Gene (human)	KLF9 (GeneCards)
Gene synonyms (human)	BTEB, BTEB1
Gene (mouse)	Klf9
Gene synonyms (mouse)	Bteb, Bteb-1, Bteb1
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	23
Consensus	SvvRKGGGCGGGGMbbSSSvSSS
GC content	82.84%
Information content (bits; total / per base)	20.437 / 0.889
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (32)	0.769	0.855	0.614	0.723	0.818	0.951	3.996	5.091	95.231	267.77

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.245	1.463	0.083	0.037

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.9
HGNC	HGNC:1123
MGI	MGI:1333856
EntrezGene (human)	GeneID:687 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	KLF9_HUMAN
UniProt ID (mouse)	KLF9_MOUSE
UniProt AC (human)	Q13886 (TFClass)
UniProt AC (mouse)	O35739 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KLF9.H12INVITRO.1.P.D.pcm
PWM	KLF9.H12INVITRO.1.P.D.pwm
PFM	KLF9.H12INVITRO.1.P.D.pfm
Alignment	KLF9.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	KLF9.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	KLF9.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	KLF9.H12INVITRO.1.P.D_meme_format.meme
Transfac format	KLF9.H12INVITRO.1.P.D_transfac_format.txt
Homer format	KLF9.H12INVITRO.1.P.D_homer_format_0.001.txt KLF9.H12INVITRO.1.P.D_homer_format_0.0005.txt KLF9.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	96.0	169.0	643.0	92.0
02	175.0	225.0	491.0	109.0
03	377.0	163.0	328.0	132.0
04	119.0	63.0	792.0	26.0
05	61.0	9.0	763.0	167.0
06	77.0	8.0	909.0	6.0
07	5.0	9.0	978.0	8.0
08	7.0	7.0	984.0	2.0
09	60.0	862.0	2.0	76.0
10	9.0	3.0	976.0	12.0
11	1.0	20.0	754.0	225.0
12	21.0	11.0	959.0	9.0
13	22.0	22.0	927.0	29.0
14	92.0	804.0	62.0	42.0
15	89.25	468.25	300.25	142.25
16	121.0	143.0	527.0	209.0
17	116.0	144.0	641.0	99.0
18	95.0	191.0	675.0	39.0
19	174.0	199.0	584.0	43.0
20	125.0	236.0	567.0	72.0
21	104.0	168.0	639.0	89.0
22	102.0	189.0	609.0	100.0
23	134.0	153.0	677.0	36.0

PFM

	A	C	G	T
01	0.096	0.169	0.643	0.092
02	0.175	0.225	0.491	0.109
03	0.377	0.163	0.328	0.132
04	0.119	0.063	0.792	0.026
05	0.061	0.009	0.763	0.167
06	0.077	0.008	0.909	0.006
07	0.005	0.009	0.978	0.008
08	0.007	0.007	0.984	0.002
09	0.06	0.862	0.002	0.076
10	0.009	0.003	0.976	0.012
11	0.001	0.02	0.754	0.225
12	0.021	0.011	0.959	0.009
13	0.022	0.022	0.927	0.029
14	0.092	0.804	0.062	0.042
15	0.089	0.468	0.3	0.142
16	0.121	0.143	0.527	0.209
17	0.116	0.144	0.641	0.099
18	0.095	0.191	0.675	0.039
19	0.174	0.199	0.584	0.043
20	0.125	0.236	0.567	0.072
21	0.104	0.168	0.639	0.089
22	0.102	0.189	0.609	0.1
23	0.134	0.153	0.677	0.036

PWM

	A	C	G	T
01	-0.946	-0.388	0.94	-0.988
02	-0.354	-0.105	0.672	-0.821
03	0.408	-0.424	0.27	-0.633
04	-0.735	-1.358	1.148	-2.206
05	-1.39	-3.156	1.111	-0.4
06	-1.162	-3.253	1.286	-3.484
07	-3.622	-3.156	1.359	-3.253
08	-3.362	-3.362	1.365	-4.213
09	-1.406	1.233	-4.213	-1.175
10	-3.156	-3.975	1.357	-2.909
11	-4.525	-2.45	1.099	-0.105
12	-2.405	-2.985	1.339	-3.156
13	-2.362	-2.362	1.305	-2.103
14	-0.988	1.163	-1.374	-1.75
15	-1.018	0.624	0.182	-0.559
16	-0.718	-0.553	0.742	-0.178
17	-0.76	-0.547	0.937	-0.916
18	-0.956	-0.267	0.989	-1.821
19	-0.359	-0.226	0.845	-1.728
20	-0.686	-0.057	0.815	-1.228
21	-0.867	-0.394	0.934	-1.02
22	-0.887	-0.278	0.886	-0.906
23	-0.618	-0.487	0.992	-1.898

Standard thresholds

P-value	Threshold
0.001	0.72301
0.0005	2.07086
0.0001	4.93046