KLF9.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF9.H12INVITRO.0.P.D
Gene (human)	KLF9 (GeneCards)
Gene synonyms (human)	BTEB, BTEB1
Gene (mouse)	Klf9
Gene synonyms (mouse)	Bteb, Bteb-1, Bteb1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	vdGKGGGYGKGKYh
GC content	75.04%
Information content (bits; total / per base)	14.869 / 1.062
Data sources	ChIP-Seq
Aligned words	994

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (32)	0.88	0.963	0.805	0.904	0.888	0.978	4.224	5.166	181.253	632.538

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	4.584	3.546	0.137	0.059

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.9
HGNC	HGNC:1123
MGI	MGI:1333856
EntrezGene (human)	GeneID:687 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	KLF9_HUMAN
UniProt ID (mouse)	KLF9_MOUSE
UniProt AC (human)	Q13886 (TFClass)
UniProt AC (mouse)	O35739 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KLF9.H12INVITRO.0.P.D.pcm
PWM	KLF9.H12INVITRO.0.P.D.pwm
PFM	KLF9.H12INVITRO.0.P.D.pfm
Alignment	KLF9.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	KLF9.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	KLF9.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	KLF9.H12INVITRO.0.P.D_meme_format.meme
Transfac format	KLF9.H12INVITRO.0.P.D_transfac_format.txt
Homer format	KLF9.H12INVITRO.0.P.D_homer_format_0.001.txt KLF9.H12INVITRO.0.P.D_homer_format_0.0005.txt KLF9.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	287.0	163.0	419.0	125.0
02	481.0	65.0	318.0	130.0
03	169.0	24.0	777.0	24.0
04	48.0	1.0	586.0	359.0
05	23.0	0.0	966.0	5.0
06	6.0	1.0	978.0	9.0
07	10.0	10.0	972.0	2.0
08	34.0	647.0	3.0	310.0
09	15.0	4.0	964.0	11.0
10	7.0	9.0	344.0	634.0
11	18.0	3.0	957.0	16.0
12	63.0	70.0	685.0	176.0
13	42.0	785.0	73.0	94.0
14	154.0	467.0	151.0	222.0

PFM

	A	C	G	T
01	0.289	0.164	0.422	0.126
02	0.484	0.065	0.32	0.131
03	0.17	0.024	0.782	0.024
04	0.048	0.001	0.59	0.361
05	0.023	0.0	0.972	0.005
06	0.006	0.001	0.984	0.009
07	0.01	0.01	0.978	0.002
08	0.034	0.651	0.003	0.312
09	0.015	0.004	0.97	0.011
10	0.007	0.009	0.346	0.638
11	0.018	0.003	0.963	0.016
12	0.063	0.07	0.689	0.177
13	0.042	0.79	0.073	0.095
14	0.155	0.47	0.152	0.223

PWM

	A	C	G	T
01	0.143	-0.418	0.52	-0.68
02	0.657	-1.322	0.245	-0.642
03	-0.382	-2.275	1.135	-2.275
04	-1.616	-4.52	0.854	0.366
05	-2.315	-4.977	1.353	-3.616
06	-3.478	-4.52	1.365	-3.15
07	-3.061	-3.061	1.359	-4.207
08	-1.946	0.953	-3.969	0.22
09	-2.705	-3.777	1.351	-2.979
10	-3.356	-3.15	0.323	0.932
11	-2.54	-3.969	1.343	-2.647
12	-1.352	-1.25	1.01	-0.342
13	-1.744	1.146	-1.209	-0.961
14	-0.474	0.628	-0.494	-0.112

Standard thresholds

P-value	Threshold
0.001	2.80651
0.0005	4.03276
0.0001	6.57711