KLF8.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF8.H12INVIVO.1.P.C
Gene (human)	KLF8 (GeneCards)
Gene synonyms (human)	BKLF3, ZNF741
Gene (mouse)	Klf8
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	23
Consensus	vRGGGMGGGGvndRRvRdRRvvR
GC content	72.51%
Information content (bits; total / per base)	16.069 / 0.699
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.696	0.707	0.479	0.487	0.833	0.852	3.223	3.44	6.444	10.215

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.8
HGNC	HGNC:6351
MGI	MGI:2442430
EntrezGene (human)	GeneID:11279 (SSTAR profile)
EntrezGene (mouse)	GeneID:245671 (SSTAR profile)
UniProt ID (human)	KLF8_HUMAN
UniProt ID (mouse)	KLF8_MOUSE
UniProt AC (human)	O95600 (TFClass)
UniProt AC (mouse)	Q8BLM0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KLF8.H12INVIVO.1.P.C.pcm
PWM	KLF8.H12INVIVO.1.P.C.pwm
PFM	KLF8.H12INVIVO.1.P.C.pfm
Alignment	KLF8.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	KLF8.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	KLF8.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	KLF8.H12INVIVO.1.P.C_meme_format.meme
Transfac format	KLF8.H12INVIVO.1.P.C_transfac_format.txt
Homer format	KLF8.H12INVIVO.1.P.C_homer_format_0.001.txt KLF8.H12INVIVO.1.P.C_homer_format_0.0005.txt KLF8.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	257.0	114.0	535.0	92.0
02	237.0	24.0	546.0	191.0
03	188.0	9.0	787.0	14.0
04	30.0	4.0	939.0	25.0
05	24.0	12.0	958.0	4.0
06	284.0	553.0	2.0	159.0
07	30.0	11.0	932.0	25.0
08	40.0	7.0	786.0	165.0
09	209.0	11.0	750.0	28.0
10	138.0	9.0	802.0	49.0
11	202.0	546.0	205.0	45.0
12	254.0	267.0	273.0	204.0
13	174.0	117.0	578.0	129.0
14	217.0	48.0	651.0	82.0
15	273.0	47.0	633.0	45.0
16	321.0	92.0	503.0	82.0
17	134.0	125.0	688.0	51.0
18	264.0	112.0	436.0	186.0
19	177.0	78.0	652.0	91.0
20	177.0	66.0	663.0	92.0
21	259.0	126.0	553.0	60.0
22	253.0	125.0	496.0	124.0
23	154.0	102.0	670.0	72.0

PFM

	A	C	G	T
01	0.258	0.114	0.536	0.092
02	0.237	0.024	0.547	0.191
03	0.188	0.009	0.789	0.014
04	0.03	0.004	0.941	0.025
05	0.024	0.012	0.96	0.004
06	0.285	0.554	0.002	0.159
07	0.03	0.011	0.934	0.025
08	0.04	0.007	0.788	0.165
09	0.209	0.011	0.752	0.028
10	0.138	0.009	0.804	0.049
11	0.202	0.547	0.205	0.045
12	0.255	0.268	0.274	0.204
13	0.174	0.117	0.579	0.129
14	0.217	0.048	0.652	0.082
15	0.274	0.047	0.634	0.045
16	0.322	0.092	0.504	0.082
17	0.134	0.125	0.689	0.051
18	0.265	0.112	0.437	0.186
19	0.177	0.078	0.653	0.091
20	0.177	0.066	0.664	0.092
21	0.26	0.126	0.554	0.06
22	0.254	0.125	0.497	0.124
23	0.154	0.102	0.671	0.072

PWM

	A	C	G	T
01	0.029	-0.775	0.759	-0.986
02	-0.051	-2.279	0.779	-0.265
03	-0.281	-3.154	1.144	-2.771
04	-2.069	-3.781	1.32	-2.241
05	-2.279	-2.907	1.34	-3.781
06	0.129	0.792	-4.211	-0.447
07	-2.069	-2.983	1.313	-2.241
08	-1.795	-3.36	1.143	-0.41
09	-0.176	-2.983	1.096	-2.134
10	-0.587	-3.154	1.163	-1.6
11	-0.21	0.779	-0.195	-1.682
12	0.018	0.067	0.089	-0.2
13	-0.357	-0.75	0.836	-0.653
14	-0.139	-1.62	0.955	-1.099
15	0.089	-1.64	0.927	-1.682
16	0.25	-0.986	0.698	-1.099
17	-0.616	-0.684	1.01	-1.561
18	0.056	-0.793	0.555	-0.291
19	-0.34	-1.148	0.956	-0.997
20	-0.34	-1.311	0.973	-0.986
21	0.037	-0.676	0.792	-1.404
22	0.014	-0.684	0.684	-0.692
23	-0.478	-0.885	0.983	-1.226

Standard thresholds

P-value	Threshold
0.001	2.92856
0.0005	4.04031
0.0001	6.38336