KLF7.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF7.H12INVIVO.0.P.B
Gene (human)	KLF7 (GeneCards)
Gene synonyms (human)	UKLF
Gene (mouse)	Klf7
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	10
Consensus	vdGGGCGKRR
GC content	80.0%
Information content (bits; total / per base)	10.621 / 1.062
Data sources	ChIP-Seq
Aligned words	74

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.7	0.712	0.468	0.482	0.808	0.827	2.553	2.638	9.854	16.42

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.7
HGNC	HGNC:6350
MGI	MGI:1935151
EntrezGene (human)	GeneID:8609 (SSTAR profile)
EntrezGene (mouse)	GeneID:93691 (SSTAR profile)
UniProt ID (human)	KLF7_HUMAN
UniProt ID (mouse)	KLF7_MOUSE
UniProt AC (human)	O75840 (TFClass)
UniProt AC (mouse)	Q99JB0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KLF7.H12INVIVO.0.P.B.pcm
PWM	KLF7.H12INVIVO.0.P.B.pwm
PFM	KLF7.H12INVIVO.0.P.B.pfm
Alignment	KLF7.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	KLF7.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	KLF7.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	KLF7.H12INVIVO.0.P.B_meme_format.meme
Transfac format	KLF7.H12INVIVO.0.P.B_transfac_format.txt
Homer format	KLF7.H12INVIVO.0.P.B_homer_format_0.001.txt KLF7.H12INVIVO.0.P.B_homer_format_0.0005.txt KLF7.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	22.0	18.0	29.0	5.0
02	18.0	4.0	31.0	21.0
03	1.0	0.0	72.0	1.0
04	0.0	0.0	71.0	3.0
05	2.0	1.0	71.0	0.0
06	6.0	61.0	0.0	7.0
07	2.0	0.0	71.0	1.0
08	2.0	5.0	53.0	14.0
09	14.0	3.0	53.0	4.0
10	14.0	4.0	45.0	11.0

PFM

	A	C	G	T
01	0.297	0.243	0.392	0.068
02	0.243	0.054	0.419	0.284
03	0.014	0.0	0.973	0.014
04	0.0	0.0	0.959	0.041
05	0.027	0.014	0.959	0.0
06	0.081	0.824	0.0	0.095
07	0.027	0.0	0.959	0.014
08	0.027	0.068	0.716	0.189
09	0.189	0.041	0.716	0.054
10	0.189	0.054	0.608	0.149

PWM

	A	C	G	T
01	0.164	-0.026	0.429	-1.17
02	-0.026	-1.35	0.494	0.12
03	-2.244	-2.901	1.317	-2.244
04	-2.901	-2.901	1.303	-1.569
05	-1.851	-2.244	1.303	-2.901
06	-1.018	1.154	-2.901	-0.885
07	-1.851	-2.901	1.303	-2.244
08	-1.851	-1.17	1.016	-0.261
09	-0.261	-1.569	1.016	-1.35
10	-0.261	-1.35	0.856	-0.483

Standard thresholds

P-value	Threshold
0.001	4.843425
0.0005	5.65916
0.0001	7.27429