MotifKLF6.H12INVIVO.0.P.B
Gene (human)KLF6
(GeneCards)
Gene synonyms (human)BCD1, COPEB, CPBP, ST12
Gene (mouse)Klf6
Gene synonyms (mouse)Copeb, Cpbp
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length18
ConsensusnvvdGGGMGKKGvvbbvv
GC content70.87%
Information content (bits; total / per base)11.526 / 0.64
Data sourcesChIP-Seq
Aligned words991

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.709 0.755 0.485 0.556 0.778 0.863 2.538 3.272 4.196 48.377

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.786 0.721 0.713 0.669 0.637 0.618
best 0.82 0.747 0.768 0.706 0.686 0.653
Methyl HT-SELEX, 1 experiments median 0.82 0.747 0.768 0.706 0.686 0.653
best 0.82 0.747 0.768 0.706 0.686 0.653
Non-Methyl HT-SELEX, 1 experiments median 0.752 0.695 0.659 0.631 0.587 0.583
best 0.752 0.695 0.659 0.631 0.587 0.583
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyKr-like {2.3.1.2} (TFClass)
TFClass IDTFClass: 2.3.1.2.6
HGNCHGNC:2235
MGIMGI:1346318
EntrezGene (human)GeneID:1316
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)KLF6_HUMAN
UniProt ID (mouse)KLF6_MOUSE
UniProt AC (human)Q99612
(TFClass)
UniProt AC (mouse)O08584
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01209.0244.0368.0170.0
02237.0127.0533.094.0
03365.0251.0300.075.0
04453.029.0276.0233.0
0527.04.0860.0100.0
064.02.0975.010.0
0710.04.0970.07.0
08242.0532.03.0214.0
0990.021.0869.011.0
1013.041.0628.0309.0
11104.068.0690.0129.0
1269.041.0831.050.0
13227.0493.0166.0105.0
14222.0432.0171.0166.0
1598.0215.0428.0250.0
16120.0188.0554.0129.0
17149.0255.0501.086.0
18300.0190.0382.0119.0
PFM
ACGT
010.2110.2460.3710.172
020.2390.1280.5380.095
030.3680.2530.3030.076
040.4570.0290.2790.235
050.0270.0040.8680.101
060.0040.0020.9840.01
070.010.0040.9790.007
080.2440.5370.0030.216
090.0910.0210.8770.011
100.0130.0410.6340.312
110.1050.0690.6960.13
120.070.0410.8390.05
130.2290.4970.1680.106
140.2240.4360.1730.168
150.0990.2170.4320.252
160.1210.190.5590.13
170.150.2570.5060.087
180.3030.1920.3850.12
PWM
ACGT
01-0.169-0.0150.393-0.373
02-0.044-0.6620.762-0.958
030.3850.0130.19-1.179
040.6-2.0940.107-0.061
05-2.162-3.7751.24-0.897
06-3.775-4.2041.365-3.058
07-3.058-3.7751.36-3.353
08-0.0230.761-3.967-0.145
09-1.001-2.3961.25-2.976
10-2.83-1.7650.9260.22
11-0.859-1.2751.02-0.646
12-1.261-1.7651.205-1.573
13-0.0870.685-0.397-0.849
14-0.1090.553-0.368-0.397
15-0.917-0.1410.5440.009
16-0.718-0.2740.801-0.646
17-0.5040.0290.701-1.045
180.19-0.2630.431-0.726
Standard thresholds
P-value Threshold
0.001 4.36801
0.0005 5.30956
0.0001 7.22291