MotifKLF6.H12CORE.1.SM.B
Gene (human)KLF6
(GeneCards)
Gene synonyms (human)BCD1, COPEB, CPBP, ST12
Gene (mouse)Klf6
Gene synonyms (mouse)Copeb, Cpbp
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length14
ConsensusbdddWGGGCGTKKb
GC content66.09%
Information content (bits; total / per base)13.39 / 0.956
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words6748

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (12) 0.707 0.75 0.52 0.54 0.734 0.794 2.008 2.193 7.186 49.854

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.884 0.835 0.801 0.761 0.698 0.683
best 0.907 0.857 0.843 0.797 0.742 0.718
Methyl HT-SELEX, 1 experiments median 0.907 0.857 0.843 0.797 0.742 0.718
best 0.907 0.857 0.843 0.797 0.742 0.718
Non-Methyl HT-SELEX, 1 experiments median 0.862 0.813 0.759 0.725 0.653 0.648
best 0.862 0.813 0.759 0.725 0.653 0.648
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyKr-like {2.3.1.2} (TFClass)
TFClass IDTFClass: 2.3.1.2.6
HGNCHGNC:2235
MGIMGI:1346318
EntrezGene (human)GeneID:1316
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)KLF6_HUMAN
UniProt ID (mouse)KLF6_MOUSE
UniProt AC (human)Q99612
(TFClass)
UniProt AC (mouse)O08584
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011136.01166.02856.01590.0
021111.5873.53176.51586.5
031137.0792.03078.01741.0
042154.0423.02248.01923.0
052510.054.01191.02993.0
06102.01.06644.01.0
070.01.06747.00.0
080.00.06748.00.0
0911.06102.00.0635.0
100.00.06748.00.0
1152.08.0284.06404.0
12953.0180.04485.01130.0
13785.75525.754143.751292.75
14741.01895.02069.02043.0
PFM
ACGT
010.1680.1730.4230.236
020.1650.1290.4710.235
030.1680.1170.4560.258
040.3190.0630.3330.285
050.3720.0080.1760.444
060.0150.00.9850.0
070.00.01.00.0
080.00.01.00.0
090.0020.9040.00.094
100.00.01.00.0
110.0080.0010.0420.949
120.1410.0270.6650.167
130.1160.0780.6140.192
140.110.2810.3070.303
PWM
ACGT
01-0.395-0.3690.526-0.059
02-0.417-0.6570.632-0.061
03-0.394-0.7550.6010.031
040.244-1.3790.2870.131
050.397-3.403-0.3480.573
06-2.786-6.2681.37-6.268
07-6.642-6.2681.385-6.642
08-6.642-6.6421.385-6.642
09-4.8511.285-6.642-0.975
10-6.642-6.6421.385-6.642
11-3.439-5.109-1.7751.333
12-0.57-2.2270.977-0.4
13-0.763-1.1630.898-0.266
14-0.8210.1160.2040.191
Standard thresholds
P-value Threshold
0.001 2.35196
0.0005 4.03576
0.0001 7.229365