KLF17.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF17.H12INVIVO.1.P.C
Gene (human)	KLF17 (GeneCards)
Gene synonyms (human)	ZNF393
Gene (mouse)	Klf17
Gene synonyms (mouse)	Gzf, Zfp393, Znf393
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	11
Consensus	dvRGGGWGRRR
GC content	67.46%
Information content (bits; total / per base)	10.449 / 0.95
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.63	0.637	0.442	0.451	0.727	0.74	2.076	2.145	0.708	1.347

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.866	0.805	0.806	0.752	0.721	0.689
Methyl HT-SELEX, 1 experiments	best	0.866	0.805	0.806	0.752	0.721	0.689

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.17
HGNC	HGNC:18830
MGI	MGI:2181068
EntrezGene (human)	GeneID:128209 (SSTAR profile)
EntrezGene (mouse)	GeneID:75753 (SSTAR profile)
UniProt ID (human)	KLF17_HUMAN
UniProt ID (mouse)	KLF17_MOUSE
UniProt AC (human)	Q5JT82 (TFClass)
UniProt AC (mouse)	Q8CFA7 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	KLF17.H12INVIVO.1.P.C.pcm
PWM	KLF17.H12INVIVO.1.P.C.pwm
PFM	KLF17.H12INVIVO.1.P.C.pfm
Alignment	KLF17.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	KLF17.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	KLF17.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	KLF17.H12INVIVO.1.P.C_meme_format.meme
Transfac format	KLF17.H12INVIVO.1.P.C_transfac_format.txt
Homer format	KLF17.H12INVIVO.1.P.C_homer_format_0.001.txt KLF17.H12INVIVO.1.P.C_homer_format_0.0005.txt KLF17.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	244.0	45.0	431.0	280.0
02	187.0	184.0	563.0	66.0
03	667.0	49.0	181.0	103.0
04	67.0	4.0	910.0	19.0
05	21.0	11.0	934.0	34.0
06	34.0	25.0	930.0	11.0
07	745.0	63.0	5.0	187.0
08	60.0	6.0	911.0	23.0
09	121.0	15.0	759.0	105.0
10	258.0	41.0	658.0	43.0
11	201.0	38.0	658.0	103.0

PFM

	A	C	G	T
01	0.244	0.045	0.431	0.28
02	0.187	0.184	0.563	0.066
03	0.667	0.049	0.181	0.103
04	0.067	0.004	0.91	0.019
05	0.021	0.011	0.934	0.034
06	0.034	0.025	0.93	0.011
07	0.745	0.063	0.005	0.187
08	0.06	0.006	0.911	0.023
09	0.121	0.015	0.759	0.105
10	0.258	0.041	0.658	0.043
11	0.201	0.038	0.658	0.103

PWM

	A	C	G	T
01	-0.024	-1.684	0.542	0.113
02	-0.288	-0.304	0.808	-1.313
03	0.977	-1.602	-0.32	-0.877
04	-1.298	-3.783	1.287	-2.497
05	-2.405	-2.985	1.313	-1.952
06	-1.952	-2.243	1.309	-2.985
07	1.087	-1.358	-3.622	-0.288
08	-1.406	-3.484	1.288	-2.32
09	-0.718	-2.711	1.106	-0.858
10	0.031	-1.774	0.963	-1.728
11	-0.216	-1.846	0.963	-0.877

Standard thresholds

P-value	Threshold
0.001	4.6137
0.0005	5.47541
0.0001	7.263625