MotifKLF17.H12INVIVO.1.P.C
Gene (human)KLF17
(GeneCards)
Gene synonyms (human)ZNF393
Gene (mouse)Klf17
Gene synonyms (mouse)Gzf, Zfp393, Znf393
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length11
ConsensusdvRGGGWGRRR
GC content67.46%
Information content (bits; total / per base)10.449 / 0.95
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (6) 0.63 0.637 0.442 0.451 0.727 0.74 2.076 2.145 0.708 1.347

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Methyl HT-SELEX, 1 experiments median 0.866 0.805 0.806 0.752 0.721 0.689
best 0.866 0.805 0.806 0.752 0.721 0.689
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyKr-like {2.3.1.2} (TFClass)
TFClass IDTFClass: 2.3.1.2.17
HGNCHGNC:18830
MGIMGI:2181068
EntrezGene (human)GeneID:128209
(SSTAR profile)
EntrezGene (mouse)GeneID:75753
(SSTAR profile)
UniProt ID (human)KLF17_HUMAN
UniProt ID (mouse)KLF17_MOUSE
UniProt AC (human)Q5JT82
(TFClass)
UniProt AC (mouse)Q8CFA7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 1
PCM
ACGT
01244.045.0431.0280.0
02187.0184.0563.066.0
03667.049.0181.0103.0
0467.04.0910.019.0
0521.011.0934.034.0
0634.025.0930.011.0
07745.063.05.0187.0
0860.06.0911.023.0
09121.015.0759.0105.0
10258.041.0658.043.0
11201.038.0658.0103.0
PFM
ACGT
010.2440.0450.4310.28
020.1870.1840.5630.066
030.6670.0490.1810.103
040.0670.0040.910.019
050.0210.0110.9340.034
060.0340.0250.930.011
070.7450.0630.0050.187
080.060.0060.9110.023
090.1210.0150.7590.105
100.2580.0410.6580.043
110.2010.0380.6580.103
PWM
ACGT
01-0.024-1.6840.5420.113
02-0.288-0.3040.808-1.313
030.977-1.602-0.32-0.877
04-1.298-3.7831.287-2.497
05-2.405-2.9851.313-1.952
06-1.952-2.2431.309-2.985
071.087-1.358-3.622-0.288
08-1.406-3.4841.288-2.32
09-0.718-2.7111.106-0.858
100.031-1.7740.963-1.728
11-0.216-1.8460.963-0.877
Standard thresholds
P-value Threshold
0.001 4.6137
0.0005 5.47541
0.0001 7.263625