MotifKLF15.H12INVIVO.1.P.C
Gene (human)KLF15
(GeneCards)
Gene synonyms (human)KKLF
Gene (mouse)Klf15
Gene synonyms (mouse)Cklf
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length20
ConsensusRRGGGMGGRGvdRRRSSvSR
GC content74.93%
Information content (bits; total / per base)17.374 / 0.869
Data sourcesChIP-Seq
Aligned words998

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.819 0.865 0.65 0.71 0.895 0.926 4.05 4.157 74.237 122.602

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.685 0.631 0.613 0.588 0.557 0.555
best 0.713 0.656 0.62 0.6 0.563 0.558

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.624 0.138 0.209 0.062
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyKr-like {2.3.1.2} (TFClass)
TFClass IDTFClass: 2.3.1.2.15
HGNCHGNC:14536
MGIMGI:1929988
EntrezGene (human)GeneID:28999
(SSTAR profile)
EntrezGene (mouse)GeneID:66277
(SSTAR profile)
UniProt ID (human)KLF15_HUMAN
UniProt ID (mouse)KLF15_MOUSE
UniProt AC (human)Q9UIH9
(TFClass)
UniProt AC (mouse)Q9EPW2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01228.0122.0584.064.0
02231.017.0625.0125.0
03284.010.0702.02.0
048.04.0979.07.0
057.010.0973.08.0
06409.0461.04.0124.0
0726.03.0958.011.0
0834.05.0895.064.0
09437.013.0499.049.0
10131.020.0824.023.0
11273.0386.0282.057.0
12381.0166.0282.0169.0
13217.061.0663.057.0
14171.024.0763.040.0
15256.038.0676.028.0
16144.0149.0683.022.0
17108.0119.0732.039.0
18338.0187.0360.0113.0
1977.079.0775.067.0
2096.026.0798.078.0
PFM
ACGT
010.2280.1220.5850.064
020.2310.0170.6260.125
030.2850.010.7030.002
040.0080.0040.9810.007
050.0070.010.9750.008
060.410.4620.0040.124
070.0260.0030.960.011
080.0340.0050.8970.064
090.4380.0130.50.049
100.1310.020.8260.023
110.2740.3870.2830.057
120.3820.1660.2830.169
130.2170.0610.6640.057
140.1710.0240.7650.04
150.2570.0380.6770.028
160.1440.1490.6840.022
170.1080.1190.7330.039
180.3390.1870.3610.113
190.0770.0790.7770.067
200.0960.0260.80.078
PWM
ACGT
01-0.089-0.7080.846-1.341
02-0.076-2.5960.914-0.684
030.129-3.0651.03-4.211
04-3.252-3.7811.362-3.36
05-3.36-3.0651.356-3.252
060.4920.611-3.781-0.692
07-2.204-3.9731.34-2.983
08-1.95-3.621.272-1.341
090.558-2.8370.69-1.6
10-0.638-2.4481.19-2.318
110.0890.4340.122-1.453
120.421-0.4040.122-0.386
13-0.139-1.3880.973-1.453
14-0.375-2.2791.113-1.795
150.026-1.8440.992-2.134
16-0.545-0.5111.003-2.36
17-0.828-0.7331.072-1.819
180.302-0.2860.365-0.784
19-1.16-1.1351.129-1.296
20-0.944-2.2041.158-1.148
Standard thresholds
P-value Threshold
0.001 2.13106
0.0005 3.36191
0.0001 5.95316