KLF15.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF15.H12INVIVO.1.P.C
Gene (human)	KLF15 (GeneCards)
Gene synonyms (human)	KKLF
Gene (mouse)	Klf15
Gene synonyms (mouse)	Cklf
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	20
Consensus	RRGGGMGGRGvdRRRSSvSR
GC content	74.93%
Information content (bits; total / per base)	17.374 / 0.869
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.819	0.865	0.65	0.71	0.895	0.926	4.05	4.157	74.237	122.602

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.685	0.631	0.613	0.588	0.557	0.555
Non-Methyl HT-SELEX, 2 experiments	best	0.713	0.656	0.62	0.6	0.563	0.558

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.624	0.138	0.209	0.062

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.15
HGNC	HGNC:14536
MGI	MGI:1929988
EntrezGene (human)	GeneID:28999 (SSTAR profile)
EntrezGene (mouse)	GeneID:66277 (SSTAR profile)
UniProt ID (human)	KLF15_HUMAN
UniProt ID (mouse)	KLF15_MOUSE
UniProt AC (human)	Q9UIH9 (TFClass)
UniProt AC (mouse)	Q9EPW2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	KLF15.H12INVIVO.1.P.C.pcm
PWM	KLF15.H12INVIVO.1.P.C.pwm
PFM	KLF15.H12INVIVO.1.P.C.pfm
Alignment	KLF15.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	KLF15.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	KLF15.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	KLF15.H12INVIVO.1.P.C_meme_format.meme
Transfac format	KLF15.H12INVIVO.1.P.C_transfac_format.txt
Homer format	KLF15.H12INVIVO.1.P.C_homer_format_0.001.txt KLF15.H12INVIVO.1.P.C_homer_format_0.0005.txt KLF15.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	228.0	122.0	584.0	64.0
02	231.0	17.0	625.0	125.0
03	284.0	10.0	702.0	2.0
04	8.0	4.0	979.0	7.0
05	7.0	10.0	973.0	8.0
06	409.0	461.0	4.0	124.0
07	26.0	3.0	958.0	11.0
08	34.0	5.0	895.0	64.0
09	437.0	13.0	499.0	49.0
10	131.0	20.0	824.0	23.0
11	273.0	386.0	282.0	57.0
12	381.0	166.0	282.0	169.0
13	217.0	61.0	663.0	57.0
14	171.0	24.0	763.0	40.0
15	256.0	38.0	676.0	28.0
16	144.0	149.0	683.0	22.0
17	108.0	119.0	732.0	39.0
18	338.0	187.0	360.0	113.0
19	77.0	79.0	775.0	67.0
20	96.0	26.0	798.0	78.0

PFM

	A	C	G	T
01	0.228	0.122	0.585	0.064
02	0.231	0.017	0.626	0.125
03	0.285	0.01	0.703	0.002
04	0.008	0.004	0.981	0.007
05	0.007	0.01	0.975	0.008
06	0.41	0.462	0.004	0.124
07	0.026	0.003	0.96	0.011
08	0.034	0.005	0.897	0.064
09	0.438	0.013	0.5	0.049
10	0.131	0.02	0.826	0.023
11	0.274	0.387	0.283	0.057
12	0.382	0.166	0.283	0.169
13	0.217	0.061	0.664	0.057
14	0.171	0.024	0.765	0.04
15	0.257	0.038	0.677	0.028
16	0.144	0.149	0.684	0.022
17	0.108	0.119	0.733	0.039
18	0.339	0.187	0.361	0.113
19	0.077	0.079	0.777	0.067
20	0.096	0.026	0.8	0.078

PWM

	A	C	G	T
01	-0.089	-0.708	0.846	-1.341
02	-0.076	-2.596	0.914	-0.684
03	0.129	-3.065	1.03	-4.211
04	-3.252	-3.781	1.362	-3.36
05	-3.36	-3.065	1.356	-3.252
06	0.492	0.611	-3.781	-0.692
07	-2.204	-3.973	1.34	-2.983
08	-1.95	-3.62	1.272	-1.341
09	0.558	-2.837	0.69	-1.6
10	-0.638	-2.448	1.19	-2.318
11	0.089	0.434	0.122	-1.453
12	0.421	-0.404	0.122	-0.386
13	-0.139	-1.388	0.973	-1.453
14	-0.375	-2.279	1.113	-1.795
15	0.026	-1.844	0.992	-2.134
16	-0.545	-0.511	1.003	-2.36
17	-0.828	-0.733	1.072	-1.819
18	0.302	-0.286	0.365	-0.784
19	-1.16	-1.135	1.129	-1.296
20	-0.944	-2.204	1.158	-1.148

Standard thresholds

P-value	Threshold
0.001	2.13106
0.0005	3.36191
0.0001	5.95316