KLF15.H12INVIVO.0.S.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF15.H12INVIVO.0.S.B
Gene (human)	KLF15 (GeneCards)
Gene synonyms (human)	KKLF
Gene (mouse)	Klf15
Gene synonyms (mouse)	Cklf
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	18
Consensus	dddddddRKGGGCGKKdn
GC content	69.21%
Information content (bits; total / per base)	14.188 / 0.788
Data sources	HT-SELEX
Aligned words	6856

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.819	0.852	0.607	0.646	0.852	0.883	2.787	2.829	67.745	99.658

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.79	0.716	0.726	0.672	0.638	0.619
Non-Methyl HT-SELEX, 2 experiments	best	0.799	0.728	0.745	0.686	0.666	0.636

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.555	0.128	0.327	0.134

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.15
HGNC	HGNC:14536
MGI	MGI:1929988
EntrezGene (human)	GeneID:28999 (SSTAR profile)
EntrezGene (mouse)	GeneID:66277 (SSTAR profile)
UniProt ID (human)	KLF15_HUMAN
UniProt ID (mouse)	KLF15_MOUSE
UniProt AC (human)	Q9UIH9 (TFClass)
UniProt AC (mouse)	Q9EPW2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	KLF15.H12INVIVO.0.S.B.pcm
PWM	KLF15.H12INVIVO.0.S.B.pwm
PFM	KLF15.H12INVIVO.0.S.B.pfm
Alignment	KLF15.H12INVIVO.0.S.B.words.tsv
Threshold to P-value map	KLF15.H12INVIVO.0.S.B.thr
Motif in other formats
JASPAR format	KLF15.H12INVIVO.0.S.B_jaspar_format.txt
MEME format	KLF15.H12INVIVO.0.S.B_meme_format.meme
Transfac format	KLF15.H12INVIVO.0.S.B_transfac_format.txt
Homer format	KLF15.H12INVIVO.0.S.B_homer_format_0.001.txt KLF15.H12INVIVO.0.S.B_homer_format_0.0005.txt KLF15.H12INVIVO.0.S.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1175.5	1009.5	3157.5	1513.5
02	1114.5	792.5	3327.5	1621.5
03	1029.0	711.0	3513.0	1603.0
04	1085.0	733.0	3784.0	1254.0
05	1201.0	717.0	3660.0	1278.0
06	1343.0	693.0	3619.0	1201.0
07	1364.0	540.0	4008.0	944.0
08	1209.0	112.0	4842.0	693.0
09	1112.0	18.0	3138.0	2588.0
10	302.0	0.0	6540.0	14.0
11	0.0	15.0	6841.0	0.0
12	0.0	0.0	6856.0	0.0
13	100.0	6405.0	0.0	351.0
14	8.0	0.0	6848.0	0.0
15	329.0	75.0	1474.0	4978.0
16	1187.0	176.0	4010.0	1483.0
17	1289.5	587.5	3406.5	1572.5
18	1147.25	1438.25	2359.25	1911.25

PFM

	A	C	G	T
01	0.171	0.147	0.461	0.221
02	0.163	0.116	0.485	0.237
03	0.15	0.104	0.512	0.234
04	0.158	0.107	0.552	0.183
05	0.175	0.105	0.534	0.186
06	0.196	0.101	0.528	0.175
07	0.199	0.079	0.585	0.138
08	0.176	0.016	0.706	0.101
09	0.162	0.003	0.458	0.377
10	0.044	0.0	0.954	0.002
11	0.0	0.002	0.998	0.0
12	0.0	0.0	1.0	0.0
13	0.015	0.934	0.0	0.051
14	0.001	0.0	0.999	0.0
15	0.048	0.011	0.215	0.726
16	0.173	0.026	0.585	0.216
17	0.188	0.086	0.497	0.229
18	0.167	0.21	0.344	0.279

PWM

	A	C	G	T
01	-0.377	-0.528	0.61	-0.124
02	-0.43	-0.77	0.663	-0.055
03	-0.509	-0.878	0.717	-0.067
04	-0.457	-0.848	0.791	-0.312
05	-0.355	-0.87	0.758	-0.293
06	-0.244	-0.904	0.747	-0.355
07	-0.228	-1.152	0.849	-0.595
08	-0.348	-2.71	1.038	-0.904
09	-0.432	-4.442	0.604	0.412
10	-1.73	-6.656	1.338	-4.662
11	-6.656	-4.602	1.383	-6.656
12	-6.656	-6.656	1.385	-6.656
13	-2.821	1.317	-6.656	-1.581
14	-5.125	-6.656	1.384	-6.656
15	-1.645	-3.101	-0.151	1.065
16	-0.367	-2.265	0.849	-0.145
17	-0.284	-1.068	0.686	-0.086
18	-0.401	-0.175	0.319	0.109

Standard thresholds

P-value	Threshold
0.001	2.64161
0.0005	4.12346
0.0001	6.90296