KLF15.H12INVITRO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF15.H12INVITRO.1.P.C
Gene (human)	KLF15 (GeneCards)
Gene synonyms (human)	KKLF
Gene (mouse)	Klf15
Gene synonyms (mouse)	Cklf
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	20
Consensus	RRRGGMGGRGvnRRRRSdRR
GC content	74.0%
Information content (bits; total / per base)	16.141 / 0.807
Data sources	ChIP-Seq
Aligned words	971

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.825	0.867	0.652	0.704	0.905	0.933	4.036	4.072	65.959	115.347

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.695	0.636	0.622	0.594	0.562	0.559
Non-Methyl HT-SELEX, 2 experiments	best	0.724	0.663	0.63	0.607	0.567	0.562

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.621	0.133	0.202	0.05

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.15
HGNC	HGNC:14536
MGI	MGI:1929988
EntrezGene (human)	GeneID:28999 (SSTAR profile)
EntrezGene (mouse)	GeneID:66277 (SSTAR profile)
UniProt ID (human)	KLF15_HUMAN
UniProt ID (mouse)	KLF15_MOUSE
UniProt AC (human)	Q9UIH9 (TFClass)
UniProt AC (mouse)	Q9EPW2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	KLF15.H12INVITRO.1.P.C.pcm
PWM	KLF15.H12INVITRO.1.P.C.pwm
PFM	KLF15.H12INVITRO.1.P.C.pfm
Alignment	KLF15.H12INVITRO.1.P.C.words.tsv
Threshold to P-value map	KLF15.H12INVITRO.1.P.C.thr
Motif in other formats
JASPAR format	KLF15.H12INVITRO.1.P.C_jaspar_format.txt
MEME format	KLF15.H12INVITRO.1.P.C_meme_format.meme
Transfac format	KLF15.H12INVITRO.1.P.C_transfac_format.txt
Homer format	KLF15.H12INVITRO.1.P.C_homer_format_0.001.txt KLF15.H12INVITRO.1.P.C_homer_format_0.0005.txt KLF15.H12INVITRO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	223.0	78.0	620.0	50.0
02	249.0	23.0	612.0	87.0
03	298.0	10.0	653.0	10.0
04	16.0	3.0	947.0	5.0
05	11.0	4.0	951.0	5.0
06	394.0	464.0	0.0	113.0
07	54.0	5.0	905.0	7.0
08	23.0	8.0	853.0	87.0
09	407.0	16.0	493.0	55.0
10	122.0	27.0	791.0	31.0
11	264.0	362.0	274.0	71.0
12	317.0	212.0	254.0	188.0
13	157.0	50.0	627.0	137.0
14	145.0	24.0	739.0	63.0
15	186.0	72.0	691.0	22.0
16	213.0	122.0	586.0	50.0
17	116.0	129.0	674.0	52.0
18	251.0	120.0	450.0	150.0
19	100.0	86.0	696.0	89.0
20	124.0	72.0	668.0	107.0

PFM

	A	C	G	T
01	0.23	0.08	0.639	0.051
02	0.256	0.024	0.63	0.09
03	0.307	0.01	0.673	0.01
04	0.016	0.003	0.975	0.005
05	0.011	0.004	0.979	0.005
06	0.406	0.478	0.0	0.116
07	0.056	0.005	0.932	0.007
08	0.024	0.008	0.878	0.09
09	0.419	0.016	0.508	0.057
10	0.126	0.028	0.815	0.032
11	0.272	0.373	0.282	0.073
12	0.326	0.218	0.262	0.194
13	0.162	0.051	0.646	0.141
14	0.149	0.025	0.761	0.065
15	0.192	0.074	0.712	0.023
16	0.219	0.126	0.604	0.051
17	0.119	0.133	0.694	0.054
18	0.258	0.124	0.463	0.154
19	0.103	0.089	0.717	0.092
20	0.128	0.074	0.688	0.11

PWM

	A	C	G	T
01	-0.084	-1.121	0.933	-1.553
02	0.025	-2.291	0.92	-1.014
03	0.204	-3.038	0.985	-3.038
04	-2.624	-3.947	1.356	-3.594
05	-2.956	-3.755	1.36	-3.594
06	0.482	0.644	-4.957	-0.757
07	-1.479	-3.594	1.311	-3.334
08	-2.291	-3.225	1.252	-1.014
09	0.514	-2.624	0.705	-1.461
10	-0.681	-2.142	1.176	-2.011
11	0.083	0.397	0.12	-1.212
12	0.265	-0.134	0.045	-0.254
13	-0.432	-1.553	0.945	-0.567
14	-0.511	-2.252	1.109	-1.329
15	-0.264	-1.199	1.042	-2.333
16	-0.13	-0.681	0.877	-1.553
17	-0.731	-0.626	1.017	-1.515
18	0.033	-0.697	0.614	-0.477
19	-0.877	-1.025	1.049	-0.991
20	-0.665	-1.199	1.008	-0.81

Standard thresholds

P-value	Threshold
0.001	2.74631
0.0005	3.90771
0.0001	6.34156