KLF15.H12INVITRO.0.S.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KLF15.H12INVITRO.0.S.B
Gene (human)	KLF15 (GeneCards)
Gene synonyms (human)	KKLF
Gene (mouse)	Klf15
Gene synonyms (mouse)	Cklf
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	14
Consensus	dddRKGGGCGTGKb
GC content	73.14%
Information content (bits; total / per base)	15.633 / 1.117
Data sources	HT-SELEX
Aligned words	1653

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.819	0.856	0.654	0.692	0.825	0.856	2.65	2.746	59.276	87.824

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.842	0.786	0.757	0.715	0.652	0.644
Non-Methyl HT-SELEX, 2 experiments	best	0.846	0.795	0.773	0.721	0.682	0.658

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.561	0.152	0.382	0.157

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Three-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamily	Kr-like {2.3.1.2} (TFClass)
TFClass ID	TFClass: 2.3.1.2.15
HGNC	HGNC:14536
MGI	MGI:1929988
EntrezGene (human)	GeneID:28999 (SSTAR profile)
EntrezGene (mouse)	GeneID:66277 (SSTAR profile)
UniProt ID (human)	KLF15_HUMAN
UniProt ID (mouse)	KLF15_MOUSE
UniProt AC (human)	Q9UIH9 (TFClass)
UniProt AC (mouse)	Q9EPW2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	KLF15.H12INVITRO.0.S.B.pcm
PWM	KLF15.H12INVITRO.0.S.B.pwm
PFM	KLF15.H12INVITRO.0.S.B.pfm
Alignment	KLF15.H12INVITRO.0.S.B.words.tsv
Threshold to P-value map	KLF15.H12INVITRO.0.S.B.thr
Motif in other formats
JASPAR format	KLF15.H12INVITRO.0.S.B_jaspar_format.txt
MEME format	KLF15.H12INVITRO.0.S.B_meme_format.meme
Transfac format	KLF15.H12INVITRO.0.S.B_transfac_format.txt
Homer format	KLF15.H12INVITRO.0.S.B_homer_format_0.001.txt KLF15.H12INVITRO.0.S.B_homer_format_0.0005.txt KLF15.H12INVITRO.0.S.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	336.25	216.25	761.25	339.25
02	455.25	169.25	725.25	303.25
03	464.0	83.0	845.0	261.0
04	313.0	17.0	1209.0	114.0
05	114.0	4.0	912.0	623.0
06	36.0	0.0	1617.0	0.0
07	0.0	0.0	1653.0	0.0
08	0.0	0.0	1652.0	1.0
09	41.0	1596.0	0.0	16.0
10	0.0	0.0	1653.0	0.0
11	0.0	0.0	121.0	1532.0
12	68.0	2.0	1486.0	97.0
13	179.25	67.25	1069.25	337.25
14	186.75	641.75	424.75	399.75

PFM

	A	C	G	T
01	0.203	0.131	0.461	0.205
02	0.275	0.102	0.439	0.183
03	0.281	0.05	0.511	0.158
04	0.189	0.01	0.731	0.069
05	0.069	0.002	0.552	0.377
06	0.022	0.0	0.978	0.0
07	0.0	0.0	1.0	0.0
08	0.0	0.0	0.999	0.001
09	0.025	0.966	0.0	0.01
10	0.0	0.0	1.0	0.0
11	0.0	0.0	0.073	0.927
12	0.041	0.001	0.899	0.059
13	0.108	0.041	0.647	0.204
14	0.113	0.388	0.257	0.242

PWM

	A	C	G	T
01	-0.205	-0.644	0.609	-0.196
02	0.096	-0.886	0.561	-0.308
03	0.115	-1.588	0.713	-0.457
04	-0.276	-3.092	1.071	-1.276
05	-1.276	-4.262	0.789	0.409
06	-2.395	-5.412	1.361	-5.412
07	-5.412	-5.412	1.383	-5.412
08	-5.412	-5.412	1.382	-4.98
09	-2.271	1.348	-5.412	-3.146
10	-5.412	-5.412	1.383	-5.412
11	-5.412	-5.412	-1.218	1.307
12	-1.782	-4.68	1.277	-1.435
13	-0.829	-1.793	0.948	-0.202
14	-0.789	0.439	0.027	-0.033

Standard thresholds

P-value	Threshold
0.001	1.48226
0.0005	2.99641
0.0001	6.13826