MotifKLF1.H12INVIVO.0.P.B
Gene (human)KLF1
(GeneCards)
Gene synonyms (human)EKLF
Gene (mouse)Klf1
Gene synonyms (mouse)Elkf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusvdGGGYGKKGYbb
GC content74.79%
Information content (bits; total / per base)11.998 / 0.923
Data sourcesChIP-Seq
Aligned words999

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (25) 0.794 0.88 0.659 0.757 0.807 0.9 2.732 3.246 87.585 213.31
Mouse 2 (14) 0.9 0.926 0.779 0.819 0.9 0.917 3.323 3.445 140.465 176.469

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 4.428 2.428 0.087 0.048
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyKr-like {2.3.1.2} (TFClass)
TFClass IDTFClass: 2.3.1.2.1
HGNCHGNC:6345
MGIMGI:1342771
EntrezGene (human)GeneID:10661
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)KLF1_HUMAN
UniProt ID (mouse)KLF1_MOUSE
UniProt AC (human)Q13351
(TFClass)
UniProt AC (mouse)P46099
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01302.0334.0242.0121.0
02454.036.0250.0259.0
039.03.0970.017.0
0410.02.0984.03.0
059.010.0977.03.0
0688.0586.02.0323.0
077.08.0965.019.0
0838.048.0513.0400.0
09108.014.0768.0109.0
1041.028.0843.087.0
1161.0670.063.0205.0
1297.0494.0181.0227.0
13101.0337.0385.0176.0
PFM
ACGT
010.3020.3340.2420.121
020.4540.0360.250.259
030.0090.0030.9710.017
040.010.0020.9850.003
050.0090.010.9780.003
060.0880.5870.0020.323
070.0070.0080.9660.019
080.0380.0480.5140.4
090.1080.0140.7690.109
100.0410.0280.8440.087
110.0610.6710.0630.205
120.0970.4940.1810.227
130.1010.3370.3850.176
PWM
ACGT
010.1890.289-0.031-0.717
020.595-1.8970.0010.036
03-3.155-3.9741.352-2.597
04-3.065-4.2121.366-3.974
05-3.155-3.0651.359-3.974
06-1.0310.849-4.2120.256
07-3.361-3.2521.347-2.496
08-1.845-1.6210.7160.468
09-0.829-2.7721.119-0.82
10-1.773-2.1351.212-1.042
11-1.3890.983-1.357-0.196
12-0.9350.679-0.319-0.095
13-0.8950.2980.43-0.347
Standard thresholds
P-value Threshold
0.001 4.10191
0.0005 5.14126
0.0001 7.262665