Motif | KLF1.H12INVIVO.0.P.B |
Gene (human) | KLF1 (GeneCards) |
Gene synonyms (human) | EKLF |
Gene (mouse) | Klf1 |
Gene synonyms (mouse) | Elkf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | KLF1.H12INVIVO.0.P.B |
Gene (human) | KLF1 (GeneCards) |
Gene synonyms (human) | EKLF |
Gene (mouse) | Klf1 |
Gene synonyms (mouse) | Elkf |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | vdGGGYGKKGYbb |
GC content | 74.79% |
Information content (bits; total / per base) | 11.998 / 0.923 |
Data sources | ChIP-Seq |
Aligned words | 999 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 4 (25) | 0.794 | 0.88 | 0.659 | 0.757 | 0.807 | 0.9 | 2.732 | 3.246 | 87.585 | 213.31 |
Mouse | 2 (14) | 0.9 | 0.926 | 0.779 | 0.819 | 0.9 | 0.917 | 3.323 | 3.445 | 140.465 | 176.469 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 4.428 | 2.428 | 0.087 | 0.048 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | Three-zinc finger Kruppel-related {2.3.1} (TFClass) |
TF subfamily | Kr-like {2.3.1.2} (TFClass) |
TFClass ID | TFClass: 2.3.1.2.1 |
HGNC | HGNC:6345 |
MGI | MGI:1342771 |
EntrezGene (human) | GeneID:10661 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | KLF1_HUMAN |
UniProt ID (mouse) | KLF1_MOUSE |
UniProt AC (human) | Q13351 (TFClass) |
UniProt AC (mouse) | P46099 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 4 human, 2 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | KLF1.H12INVIVO.0.P.B.pcm |
PWM | KLF1.H12INVIVO.0.P.B.pwm |
PFM | KLF1.H12INVIVO.0.P.B.pfm |
Alignment | KLF1.H12INVIVO.0.P.B.words.tsv |
Threshold to P-value map | KLF1.H12INVIVO.0.P.B.thr |
Motif in other formats | |
JASPAR format | KLF1.H12INVIVO.0.P.B_jaspar_format.txt |
MEME format | KLF1.H12INVIVO.0.P.B_meme_format.meme |
Transfac format | KLF1.H12INVIVO.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 302.0 | 334.0 | 242.0 | 121.0 |
02 | 454.0 | 36.0 | 250.0 | 259.0 |
03 | 9.0 | 3.0 | 970.0 | 17.0 |
04 | 10.0 | 2.0 | 984.0 | 3.0 |
05 | 9.0 | 10.0 | 977.0 | 3.0 |
06 | 88.0 | 586.0 | 2.0 | 323.0 |
07 | 7.0 | 8.0 | 965.0 | 19.0 |
08 | 38.0 | 48.0 | 513.0 | 400.0 |
09 | 108.0 | 14.0 | 768.0 | 109.0 |
10 | 41.0 | 28.0 | 843.0 | 87.0 |
11 | 61.0 | 670.0 | 63.0 | 205.0 |
12 | 97.0 | 494.0 | 181.0 | 227.0 |
13 | 101.0 | 337.0 | 385.0 | 176.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.302 | 0.334 | 0.242 | 0.121 |
02 | 0.454 | 0.036 | 0.25 | 0.259 |
03 | 0.009 | 0.003 | 0.971 | 0.017 |
04 | 0.01 | 0.002 | 0.985 | 0.003 |
05 | 0.009 | 0.01 | 0.978 | 0.003 |
06 | 0.088 | 0.587 | 0.002 | 0.323 |
07 | 0.007 | 0.008 | 0.966 | 0.019 |
08 | 0.038 | 0.048 | 0.514 | 0.4 |
09 | 0.108 | 0.014 | 0.769 | 0.109 |
10 | 0.041 | 0.028 | 0.844 | 0.087 |
11 | 0.061 | 0.671 | 0.063 | 0.205 |
12 | 0.097 | 0.494 | 0.181 | 0.227 |
13 | 0.101 | 0.337 | 0.385 | 0.176 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.189 | 0.289 | -0.031 | -0.717 |
02 | 0.595 | -1.897 | 0.001 | 0.036 |
03 | -3.155 | -3.974 | 1.352 | -2.597 |
04 | -3.065 | -4.212 | 1.366 | -3.974 |
05 | -3.155 | -3.065 | 1.359 | -3.974 |
06 | -1.031 | 0.849 | -4.212 | 0.256 |
07 | -3.361 | -3.252 | 1.347 | -2.496 |
08 | -1.845 | -1.621 | 0.716 | 0.468 |
09 | -0.829 | -2.772 | 1.119 | -0.82 |
10 | -1.773 | -2.135 | 1.212 | -1.042 |
11 | -1.389 | 0.983 | -1.357 | -0.196 |
12 | -0.935 | 0.679 | -0.319 | -0.095 |
13 | -0.895 | 0.298 | 0.43 | -0.347 |
P-value | Threshold |
---|---|
0.001 | 4.10191 |
0.0005 | 5.14126 |
0.0001 | 7.262665 |