MotifKLF1.H12CORE.0.P.B
Gene (human)KLF1
(GeneCards)
Gene synonyms (human)EKLF
Gene (mouse)Klf1
Gene synonyms (mouse)Elkf
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusndGGGYGKRGYbb
GC content74.68%
Information content (bits; total / per base)11.795 / 0.907
Data sourcesChIP-Seq
Aligned words996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (25) 0.792 0.881 0.654 0.755 0.807 0.897 2.709 3.229 86.921 212.387
Mouse 2 (14) 0.899 0.926 0.776 0.816 0.901 0.918 3.312 3.44 141.196 179.699

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 4.517 2.456 0.093 0.049
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyThree-zinc finger Kruppel-related {2.3.1} (TFClass)
TF subfamilyKr-like {2.3.1.2} (TFClass)
TFClass IDTFClass: 2.3.1.2.1
HGNCHGNC:6345
MGIMGI:1342771
EntrezGene (human)GeneID:10661
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)KLF1_HUMAN
UniProt ID (mouse)KLF1_MOUSE
UniProt AC (human)Q13351
(TFClass)
UniProt AC (mouse)P46099
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01321.0309.0232.0134.0
02436.041.0274.0245.0
0314.02.0972.08.0
0421.07.0965.03.0
055.07.0980.04.0
0676.0591.00.0329.0
0710.09.0945.032.0
0822.035.0554.0385.0
09115.012.0765.0104.0
1071.024.0814.087.0
1170.0659.090.0177.0
12104.0500.0183.0209.0
13134.0326.0374.0162.0
PFM
ACGT
010.3220.310.2330.135
020.4380.0410.2750.246
030.0140.0020.9760.008
040.0210.0070.9690.003
050.0050.0070.9840.004
060.0760.5930.00.33
070.010.0090.9490.032
080.0220.0350.5560.387
090.1150.0120.7680.104
100.0710.0240.8170.087
110.070.6620.090.178
120.1040.5020.1840.21
130.1350.3270.3760.163
PWM
ACGT
010.2520.215-0.07-0.614
020.557-1.770.095-0.016
03-2.769-4.2091.357-3.25
04-2.401-3.3581.35-3.971
05-3.618-3.3581.365-3.779
06-1.1710.86-4.9790.277
07-3.063-3.1521.329-2.006
08-2.358-1.9210.7960.433
09-0.765-2.9051.118-0.864
10-1.238-2.2771.18-1.039
11-1.2520.969-1.006-0.339
12-0.8640.694-0.305-0.174
13-0.6140.2680.404-0.426
Standard thresholds
P-value Threshold
0.001 4.18621
0.0005 5.20971
0.0001 7.293065