MotifKAISO.H12INVITRO.1.P.D
Gene (human)ZBTB33
(GeneCards)
Gene synonyms (human)KAISO, ZNF348
Gene (mouse)Zbtb33
Gene synonyms (mouse)Kaiso
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length14
ConsensusdRvnMbCGCGAGAv
GC content60.87%
Information content (bits; total / per base)12.197 / 0.871
Data sourcesChIP-Seq
Aligned words561

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 15 (99) 0.836 0.959 0.812 0.957 0.783 0.957 3.98 6.469 226.796 446.357

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 3.028 6.363 0.117 0.082
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyOther with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamilyBTB-POZ {2.3.2.1} (TFClass)
TFClass IDTFClass: 2.3.2.1.12
HGNCHGNC:16682
MGIMGI:1927290
EntrezGene (human)GeneID:10009
(SSTAR profile)
EntrezGene (mouse)GeneID:56805
(SSTAR profile)
UniProt ID (human)KAISO_HUMAN
UniProt ID (mouse)KAISO_MOUSE
UniProt AC (human)Q86T24
(TFClass)
UniProt AC (mouse)Q8BN78
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 15 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01272.063.0144.082.0
02244.040.0262.015.0
03226.0110.0178.047.0
0451.0103.0103.0304.0
05147.0328.068.018.0
0642.0125.078.0316.0
0716.0527.015.03.0
0826.06.0514.015.0
0910.0520.010.021.0
1010.07.0540.04.0
11450.016.086.09.0
1214.010.0510.027.0
13448.012.090.011.0
14185.0106.0210.060.0
PFM
ACGT
010.4850.1120.2570.146
020.4350.0710.4670.027
030.4030.1960.3170.084
040.0910.1840.1840.542
050.2620.5850.1210.032
060.0750.2230.1390.563
070.0290.9390.0270.005
080.0460.0110.9160.027
090.0180.9270.0180.037
100.0180.0120.9630.007
110.8020.0290.1530.016
120.0250.0180.9090.048
130.7990.0210.160.02
140.330.1890.3740.107
PWM
ACGT
010.657-0.7870.026-0.529
020.549-1.2270.62-2.146
030.473-0.240.236-1.071
04-0.992-0.305-0.3050.768
050.0460.843-0.712-1.98
06-1.18-0.114-0.5780.806
07-2.0881.316-2.146-3.432
08-1.637-2.9291.291-2.146
09-2.5051.302-2.505-1.837
10-2.505-2.8051.34-3.235
111.158-2.088-0.482-2.595
12-2.209-2.5051.283-1.602
131.154-2.346-0.437-2.422
140.274-0.2760.4-0.834
Standard thresholds
P-value Threshold
0.001 4.15831
0.0005 5.12086
0.0001 7.11091