KAISO.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KAISO.H12INVITRO.1.P.D
Gene (human)	ZBTB33 (GeneCards)
Gene synonyms (human)	KAISO, ZNF348
Gene (mouse)	Zbtb33
Gene synonyms (mouse)	Kaiso
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	14
Consensus	dRvnMbCGCGAGAv
GC content	60.87%
Information content (bits; total / per base)	12.197 / 0.871
Data sources	ChIP-Seq
Aligned words	561

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	15 (99)	0.836	0.959	0.812	0.957	0.783	0.957	3.98	6.469	226.796	446.357

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.028	6.363	0.117	0.082

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	BTB-POZ {2.3.2.1} (TFClass)
TFClass ID	TFClass: 2.3.2.1.12
HGNC	HGNC:16682
MGI	MGI:1927290
EntrezGene (human)	GeneID:10009 (SSTAR profile)
EntrezGene (mouse)	GeneID:56805 (SSTAR profile)
UniProt ID (human)	KAISO_HUMAN
UniProt ID (mouse)	KAISO_MOUSE
UniProt AC (human)	Q86T24 (TFClass)
UniProt AC (mouse)	Q8BN78 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	15 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KAISO.H12INVITRO.1.P.D.pcm
PWM	KAISO.H12INVITRO.1.P.D.pwm
PFM	KAISO.H12INVITRO.1.P.D.pfm
Alignment	KAISO.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	KAISO.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	KAISO.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	KAISO.H12INVITRO.1.P.D_meme_format.meme
Transfac format	KAISO.H12INVITRO.1.P.D_transfac_format.txt
Homer format	KAISO.H12INVITRO.1.P.D_homer_format_0.001.txt KAISO.H12INVITRO.1.P.D_homer_format_0.0005.txt KAISO.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	272.0	63.0	144.0	82.0
02	244.0	40.0	262.0	15.0
03	226.0	110.0	178.0	47.0
04	51.0	103.0	103.0	304.0
05	147.0	328.0	68.0	18.0
06	42.0	125.0	78.0	316.0
07	16.0	527.0	15.0	3.0
08	26.0	6.0	514.0	15.0
09	10.0	520.0	10.0	21.0
10	10.0	7.0	540.0	4.0
11	450.0	16.0	86.0	9.0
12	14.0	10.0	510.0	27.0
13	448.0	12.0	90.0	11.0
14	185.0	106.0	210.0	60.0

PFM

	A	C	G	T
01	0.485	0.112	0.257	0.146
02	0.435	0.071	0.467	0.027
03	0.403	0.196	0.317	0.084
04	0.091	0.184	0.184	0.542
05	0.262	0.585	0.121	0.032
06	0.075	0.223	0.139	0.563
07	0.029	0.939	0.027	0.005
08	0.046	0.011	0.916	0.027
09	0.018	0.927	0.018	0.037
10	0.018	0.012	0.963	0.007
11	0.802	0.029	0.153	0.016
12	0.025	0.018	0.909	0.048
13	0.799	0.021	0.16	0.02
14	0.33	0.189	0.374	0.107

PWM

	A	C	G	T
01	0.657	-0.787	0.026	-0.529
02	0.549	-1.227	0.62	-2.146
03	0.473	-0.24	0.236	-1.071
04	-0.992	-0.305	-0.305	0.768
05	0.046	0.843	-0.712	-1.98
06	-1.18	-0.114	-0.578	0.806
07	-2.088	1.316	-2.146	-3.432
08	-1.637	-2.929	1.291	-2.146
09	-2.505	1.302	-2.505	-1.837
10	-2.505	-2.805	1.34	-3.235
11	1.158	-2.088	-0.482	-2.595
12	-2.209	-2.505	1.283	-1.602
13	1.154	-2.346	-0.437	-2.422
14	0.274	-0.276	0.4	-0.834

Standard thresholds

P-value	Threshold
0.001	4.15831
0.0005	5.12086
0.0001	7.11091