KAISO.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	KAISO.H12INVITRO.0.P.D
Gene (human)	ZBTB33 (GeneCards)
Gene synonyms (human)	KAISO, ZNF348
Gene (mouse)	Zbtb33
Gene synonyms (mouse)	Kaiso
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	11
Consensus	bMbCGCGAGAn
GC content	62.85%
Information content (bits; total / per base)	11.896 / 1.081
Data sources	ChIP-Seq
Aligned words	999

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	15 (99)	0.839	0.959	0.818	0.962	0.774	0.954	3.691	6.091	238.658	470.018

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.576	5.046	0.104	0.067

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	BTB-POZ {2.3.2.1} (TFClass)
TFClass ID	TFClass: 2.3.2.1.12
HGNC	HGNC:16682
MGI	MGI:1927290
EntrezGene (human)	GeneID:10009 (SSTAR profile)
EntrezGene (mouse)	GeneID:56805 (SSTAR profile)
UniProt ID (human)	KAISO_HUMAN
UniProt ID (mouse)	KAISO_MOUSE
UniProt AC (human)	Q86T24 (TFClass)
UniProt AC (mouse)	Q8BN78 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	15 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	KAISO.H12INVITRO.0.P.D.pcm
PWM	KAISO.H12INVITRO.0.P.D.pwm
PFM	KAISO.H12INVITRO.0.P.D.pfm
Alignment	KAISO.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	KAISO.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	KAISO.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	KAISO.H12INVITRO.0.P.D_meme_format.meme
Transfac format	KAISO.H12INVITRO.0.P.D_transfac_format.txt
Homer format	KAISO.H12INVITRO.0.P.D_homer_format_0.001.txt KAISO.H12INVITRO.0.P.D_homer_format_0.0005.txt KAISO.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	106.0	265.0	116.0	512.0
02	297.0	540.0	113.0	49.0
03	102.0	222.0	131.0	544.0
04	19.0	961.0	7.0	12.0
05	98.0	7.0	886.0	8.0
06	14.0	955.0	10.0	20.0
07	21.0	3.0	971.0	4.0
08	905.0	6.0	82.0	6.0
09	6.0	15.0	964.0	14.0
10	803.0	55.0	116.0	25.0
11	293.0	176.0	306.0	224.0

PFM

	A	C	G	T
01	0.106	0.265	0.116	0.513
02	0.297	0.541	0.113	0.049
03	0.102	0.222	0.131	0.545
04	0.019	0.962	0.007	0.012
05	0.098	0.007	0.887	0.008
06	0.014	0.956	0.01	0.02
07	0.021	0.003	0.972	0.004
08	0.906	0.006	0.082	0.006
09	0.006	0.015	0.965	0.014
10	0.804	0.055	0.116	0.025
11	0.293	0.176	0.306	0.224

PWM

	A	C	G	T
01	-0.848	0.059	-0.759	0.714
02	0.172	0.767	-0.785	-1.601
03	-0.886	-0.117	-0.639	0.775
04	-2.496	1.342	-3.361	-2.908
05	-0.925	-3.361	1.261	-3.252
06	-2.772	1.336	-3.065	-2.449
07	-2.404	-3.974	1.353	-3.782
08	1.282	-3.483	-1.1	-3.483
09	-3.483	-2.71	1.346	-2.772
10	1.163	-1.489	-0.759	-2.242
11	0.159	-0.347	0.202	-0.108

Standard thresholds

P-value	Threshold
0.001	4.134415
0.0005	5.15079
0.0001	7.236015