MotifKAISO.H12INVITRO.0.P.D
Gene (human)ZBTB33
(GeneCards)
Gene synonyms (human)KAISO, ZNF348
Gene (mouse)Zbtb33
Gene synonyms (mouse)Kaiso
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusbMbCGCGAGAn
GC content62.85%
Information content (bits; total / per base)11.896 / 1.081
Data sourcesChIP-Seq
Aligned words999

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 15 (99) 0.839 0.959 0.818 0.962 0.774 0.954 3.691 6.091 238.658 470.018

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 2.576 5.046 0.104 0.067
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyOther with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamilyBTB-POZ {2.3.2.1} (TFClass)
TFClass IDTFClass: 2.3.2.1.12
HGNCHGNC:16682
MGIMGI:1927290
EntrezGene (human)GeneID:10009
(SSTAR profile)
EntrezGene (mouse)GeneID:56805
(SSTAR profile)
UniProt ID (human)KAISO_HUMAN
UniProt ID (mouse)KAISO_MOUSE
UniProt AC (human)Q86T24
(TFClass)
UniProt AC (mouse)Q8BN78
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 15 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01106.0265.0116.0512.0
02297.0540.0113.049.0
03102.0222.0131.0544.0
0419.0961.07.012.0
0598.07.0886.08.0
0614.0955.010.020.0
0721.03.0971.04.0
08905.06.082.06.0
096.015.0964.014.0
10803.055.0116.025.0
11293.0176.0306.0224.0
PFM
ACGT
010.1060.2650.1160.513
020.2970.5410.1130.049
030.1020.2220.1310.545
040.0190.9620.0070.012
050.0980.0070.8870.008
060.0140.9560.010.02
070.0210.0030.9720.004
080.9060.0060.0820.006
090.0060.0150.9650.014
100.8040.0550.1160.025
110.2930.1760.3060.224
PWM
ACGT
01-0.8480.059-0.7590.714
020.1720.767-0.785-1.601
03-0.886-0.117-0.6390.775
04-2.4961.342-3.361-2.908
05-0.925-3.3611.261-3.252
06-2.7721.336-3.065-2.449
07-2.404-3.9741.353-3.782
081.282-3.483-1.1-3.483
09-3.483-2.711.346-2.772
101.163-1.489-0.759-2.242
110.159-0.3470.202-0.108
Standard thresholds
P-value Threshold
0.001 4.134415
0.0005 5.15079
0.0001 7.236015