JUND.H12INVIVO.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUND.H12INVIVO.0.PM.A
Gene (human)	JUND (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jund
Gene synonyms (mouse)	Jun-d, Jund1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	12
Consensus	vvRTGAGTCAYh
GC content	48.69%
Information content (bits; total / per base)	14.335 / 1.195
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	25 (163)	0.87	0.987	0.839	0.972	0.873	0.988	4.004	5.759	285.319	666.456
Mouse	28 (176)	0.91	0.983	0.869	0.97	0.902	0.984	3.976	5.688	281.957	648.174

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.838	0.811	0.708	0.697	0.622	0.625
Overall, 2 experiments	best	0.842	0.811	0.717	0.701	0.628	0.629
Methyl HT-SELEX, 1 experiments	median	0.834	0.811	0.699	0.692	0.616	0.621
Methyl HT-SELEX, 1 experiments	best	0.834	0.811	0.699	0.692	0.616	0.621
Non-Methyl HT-SELEX, 1 experiments	median	0.842	0.811	0.717	0.701	0.628	0.629
Non-Methyl HT-SELEX, 1 experiments	best	0.842	0.811	0.717	0.701	0.628	0.629

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	91.989	65.684	0.277	0.412

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.486	0.059	0.369	0.091

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.3
HGNC	HGNC:6206
MGI	MGI:96648
EntrezGene (human)	GeneID:3727 (SSTAR profile)
EntrezGene (mouse)	GeneID:16478 (SSTAR profile)
UniProt ID (human)	JUND_HUMAN
UniProt ID (mouse)	JUND_MOUSE
UniProt AC (human)	P17535 (TFClass)
UniProt AC (mouse)	P15066 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	25 human, 28 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	JUND.H12INVIVO.0.PM.A.pcm
PWM	JUND.H12INVIVO.0.PM.A.pwm
PFM	JUND.H12INVIVO.0.PM.A.pfm
Alignment	JUND.H12INVIVO.0.PM.A.words.tsv
Threshold to P-value map	JUND.H12INVIVO.0.PM.A.thr
Motif in other formats
JASPAR format	JUND.H12INVIVO.0.PM.A_jaspar_format.txt
MEME format	JUND.H12INVIVO.0.PM.A_meme_format.meme
Transfac format	JUND.H12INVIVO.0.PM.A_transfac_format.txt
Homer format	JUND.H12INVIVO.0.PM.A_homer_format_0.001.txt JUND.H12INVIVO.0.PM.A_homer_format_0.0005.txt JUND.H12INVIVO.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	173.0	202.0	464.0	161.0
02	292.0	170.0	379.0	159.0
03	441.0	180.0	370.0	9.0
04	1.0	4.0	3.0	992.0
05	3.0	3.0	970.0	24.0
06	983.0	2.0	2.0	13.0
07	45.0	0.0	955.0	0.0
08	4.0	6.0	3.0	987.0
09	9.0	987.0	2.0	2.0
10	994.0	0.0	2.0	4.0
11	5.0	422.0	143.0	430.0
12	182.0	430.0	144.0	244.0

PFM

	A	C	G	T
01	0.173	0.202	0.464	0.161
02	0.292	0.17	0.379	0.159
03	0.441	0.18	0.37	0.009
04	0.001	0.004	0.003	0.992
05	0.003	0.003	0.97	0.024
06	0.983	0.002	0.002	0.013
07	0.045	0.0	0.955	0.0
08	0.004	0.006	0.003	0.987
09	0.009	0.987	0.002	0.002
10	0.994	0.0	0.002	0.004
11	0.005	0.422	0.143	0.43
12	0.182	0.43	0.144	0.244

PWM

	A	C	G	T
01	-0.365	-0.212	0.615	-0.436
02	0.154	-0.382	0.414	-0.449
03	0.565	-0.326	0.39	-3.156
04	-4.525	-3.783	-3.975	1.373
05	-3.975	-3.975	1.351	-2.281
06	1.364	-4.213	-4.213	-2.839
07	-1.684	-4.982	1.335	-4.982
08	-3.783	-3.484	-3.975	1.368
09	-3.156	1.368	-4.213	-4.213
10	1.375	-4.982	-4.213	-3.783
11	-3.622	0.521	-0.553	0.539
12	-0.315	0.539	-0.547	-0.024

Standard thresholds

P-value	Threshold
0.001	2.266065
0.0005	4.05811
0.0001	6.26208