JUND.H12INVITRO.1.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUND.H12INVITRO.1.SM.B
Gene (human)	JUND (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jund
Gene synonyms (mouse)	Jun-d, Jund1
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	12
Consensus	ndbRCGTCAYbn
GC content	51.74%
Information content (bits; total / per base)	10.582 / 0.882
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	2387

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	25 (163)	0.808	0.948	0.646	0.903	0.746	0.926	1.908	4.318	127.013	738.569
Mouse	28 (176)	0.842	0.922	0.681	0.818	0.762	0.863	1.961	2.531	132.071	390.0

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.867	0.828	0.785	0.749	0.696	0.677
Overall, 2 experiments	best	0.934	0.913	0.833	0.81	0.724	0.716
Methyl HT-SELEX, 1 experiments	median	0.801	0.744	0.737	0.688	0.668	0.638
Methyl HT-SELEX, 1 experiments	best	0.801	0.744	0.737	0.688	0.668	0.638
Non-Methyl HT-SELEX, 1 experiments	median	0.934	0.913	0.833	0.81	0.724	0.716
Non-Methyl HT-SELEX, 1 experiments	best	0.934	0.913	0.833	0.81	0.724	0.716

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	10.63	35.38	0.172	0.339

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.45	0.071	0.298	0.176

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.3
HGNC	HGNC:6206
MGI	MGI:96648
EntrezGene (human)	GeneID:3727 (SSTAR profile)
EntrezGene (mouse)	GeneID:16478 (SSTAR profile)
UniProt ID (human)	JUND_HUMAN
UniProt ID (mouse)	JUND_MOUSE
UniProt AC (human)	P17535 (TFClass)
UniProt AC (mouse)	P15066 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	25 human, 28 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	JUND.H12INVITRO.1.SM.B.pcm
PWM	JUND.H12INVITRO.1.SM.B.pwm
PFM	JUND.H12INVITRO.1.SM.B.pfm
Alignment	JUND.H12INVITRO.1.SM.B.words.tsv
Threshold to P-value map	JUND.H12INVITRO.1.SM.B.thr
Motif in other formats
JASPAR format	JUND.H12INVITRO.1.SM.B_jaspar_format.txt
MEME format	JUND.H12INVITRO.1.SM.B_meme_format.meme
Transfac format	JUND.H12INVITRO.1.SM.B_transfac_format.txt
Homer format	JUND.H12INVITRO.1.SM.B_homer_format_0.001.txt JUND.H12INVITRO.1.SM.B_homer_format_0.0005.txt JUND.H12INVITRO.1.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	627.25	592.25	827.25	340.25
02	689.0	191.0	341.0	1166.0
03	213.0	346.0	679.0	1149.0
04	1181.0	46.0	1052.0	108.0
05	152.0	2208.0	21.0	6.0
06	18.0	84.0	2281.0	4.0
07	0.0	0.0	1.0	2386.0
08	120.0	2152.0	4.0	111.0
09	2247.0	127.0	12.0	1.0
10	41.0	682.0	117.0	1547.0
11	220.5	1044.5	650.5	471.5
12	540.0	778.0	585.0	484.0

PFM

	A	C	G	T
01	0.263	0.248	0.347	0.143
02	0.289	0.08	0.143	0.488
03	0.089	0.145	0.284	0.481
04	0.495	0.019	0.441	0.045
05	0.064	0.925	0.009	0.003
06	0.008	0.035	0.956	0.002
07	0.0	0.0	0.0	1.0
08	0.05	0.902	0.002	0.047
09	0.941	0.053	0.005	0.0
10	0.017	0.286	0.049	0.648
11	0.092	0.438	0.273	0.198
12	0.226	0.326	0.245	0.203

PWM

	A	C	G	T
01	0.05	-0.008	0.326	-0.559
02	0.143	-1.132	-0.557	0.668
03	-1.024	-0.543	0.129	0.654
04	0.681	-2.525	0.566	-1.695
05	-1.358	1.306	-3.262	-4.322
06	-3.402	-1.941	1.338	-4.612
07	-5.73	-5.73	-5.315	1.383
08	-1.591	1.28	-4.612	-1.668
09	1.323	-1.535	-3.76	-5.315
10	-2.635	0.133	-1.616	0.951
11	-0.99	0.558	0.086	-0.235
12	-0.1	0.264	-0.02	-0.209

Standard thresholds

P-value	Threshold
0.001	4.60056
0.0005	5.575235
0.0001	7.525