JUND.H12INVITRO.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUND.H12INVITRO.0.PM.A
Gene (human)	JUND (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jund
Gene synonyms (mouse)	Jun-d, Jund1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	13
Consensus	dYRMSTCAYSnhn
GC content	48.83%
Information content (bits; total / per base)	9.737 / 0.749
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	1596

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	25 (163)	0.855	0.983	0.798	0.966	0.832	0.973	3.1	5.185	231.921	627.745
Mouse	28 (176)	0.889	0.975	0.815	0.941	0.839	0.951	2.922	4.286	230.793	592.161

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.881	0.853	0.773	0.749	0.678	0.67
Overall, 2 experiments	best	0.904	0.877	0.799	0.773	0.695	0.687
Methyl HT-SELEX, 1 experiments	median	0.859	0.828	0.748	0.724	0.661	0.652
Methyl HT-SELEX, 1 experiments	best	0.859	0.828	0.748	0.724	0.661	0.652
Non-Methyl HT-SELEX, 1 experiments	median	0.904	0.877	0.799	0.773	0.695	0.687
Non-Methyl HT-SELEX, 1 experiments	best	0.904	0.877	0.799	0.773	0.695	0.687

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	34.718	56.01	0.26	0.382

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.5	0.012	0.283	0.077

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.3
HGNC	HGNC:6206
MGI	MGI:96648
EntrezGene (human)	GeneID:3727 (SSTAR profile)
EntrezGene (mouse)	GeneID:16478 (SSTAR profile)
UniProt ID (human)	JUND_HUMAN
UniProt ID (mouse)	JUND_MOUSE
UniProt AC (human)	P17535 (TFClass)
UniProt AC (mouse)	P15066 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	25 human, 28 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	JUND.H12INVITRO.0.PM.A.pcm
PWM	JUND.H12INVITRO.0.PM.A.pwm
PFM	JUND.H12INVITRO.0.PM.A.pfm
Alignment	JUND.H12INVITRO.0.PM.A.words.tsv
Threshold to P-value map	JUND.H12INVITRO.0.PM.A.thr
Motif in other formats
JASPAR format	JUND.H12INVITRO.0.PM.A_jaspar_format.txt
MEME format	JUND.H12INVITRO.0.PM.A_meme_format.meme
Transfac format	JUND.H12INVITRO.0.PM.A_transfac_format.txt
Homer format	JUND.H12INVITRO.0.PM.A_homer_format_0.001.txt JUND.H12INVITRO.0.PM.A_homer_format_0.0005.txt JUND.H12INVITRO.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	653.75	220.75	375.75	345.75
02	180.5	252.5	144.5	1018.5
03	311.0	105.0	1010.0	170.0
04	774.0	750.0	53.0	19.0
05	41.0	550.0	1005.0	0.0
06	0.0	0.0	0.0	1596.0
07	24.0	1445.0	0.0	127.0
08	1552.0	38.0	3.0	3.0
09	12.0	432.0	36.0	1116.0
10	83.0	898.0	434.0	181.0
11	364.0	593.0	367.0	272.0
12	250.5	510.5	171.5	663.5
13	336.0	416.0	320.0	524.0

PFM

	A	C	G	T
01	0.41	0.138	0.235	0.217
02	0.113	0.158	0.091	0.638
03	0.195	0.066	0.633	0.107
04	0.485	0.47	0.033	0.012
05	0.026	0.345	0.63	0.0
06	0.0	0.0	0.0	1.0
07	0.015	0.905	0.0	0.08
08	0.972	0.024	0.002	0.002
09	0.008	0.271	0.023	0.699
10	0.052	0.563	0.272	0.113
11	0.228	0.372	0.23	0.17
12	0.157	0.32	0.107	0.416
13	0.211	0.261	0.201	0.328

PWM

	A	C	G	T
01	0.492	-0.588	-0.06	-0.143
02	-0.788	-0.455	-1.008	0.934
03	-0.248	-1.322	0.926	-0.847
04	0.66	0.629	-1.989	-2.957
05	-2.236	0.32	0.921	-5.382
06	-5.382	-5.382	-5.382	1.383
07	-2.742	1.284	-5.382	-1.135
08	1.355	-2.309	-4.416	-4.416
09	-3.366	0.079	-2.36	1.026
10	-1.553	0.809	0.084	-0.785
11	-0.091	0.395	-0.083	-0.381
12	-0.463	0.245	-0.838	0.507
13	-0.171	0.042	-0.22	0.271

Standard thresholds

P-value	Threshold
0.001	4.956015
0.0005	5.82161
0.0001	7.40341