JUND.H12CORE.1.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUND.H12CORE.1.SM.B
Gene (human)	JUND (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jund
Gene synonyms (mouse)	Jun-d, Jund1
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	11
Consensus	dYRCGTCAYbn
GC content	48.79%
Information content (bits; total / per base)	10.291 / 0.936
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	3847

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	25 (163)	0.86	0.984	0.811	0.962	0.83	0.973	3.183	5.258	236.292	637.276
Mouse	28 (176)	0.888	0.976	0.824	0.948	0.848	0.958	3.027	4.434	240.969	599.824

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.897	0.87	0.786	0.764	0.677	0.676
Overall, 2 experiments	best	0.927	0.906	0.82	0.799	0.699	0.7
Methyl HT-SELEX, 1 experiments	median	0.867	0.834	0.752	0.729	0.654	0.651
Methyl HT-SELEX, 1 experiments	best	0.867	0.834	0.752	0.729	0.654	0.651
Non-Methyl HT-SELEX, 1 experiments	median	0.927	0.906	0.82	0.799	0.699	0.7
Non-Methyl HT-SELEX, 1 experiments	best	0.927	0.906	0.82	0.799	0.699	0.7

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	24.056	50.71	0.277	0.394

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.477	0.031	0.344	0.244

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.3
HGNC	HGNC:6206
MGI	MGI:96648
EntrezGene (human)	GeneID:3727 (SSTAR profile)
EntrezGene (mouse)	GeneID:16478 (SSTAR profile)
UniProt ID (human)	JUND_HUMAN
UniProt ID (mouse)	JUND_MOUSE
UniProt AC (human)	P17535 (TFClass)
UniProt AC (mouse)	P15066 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	25 human, 28 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	JUND.H12CORE.1.SM.B.pcm
PWM	JUND.H12CORE.1.SM.B.pwm
PFM	JUND.H12CORE.1.SM.B.pfm
Alignment	JUND.H12CORE.1.SM.B.words.tsv
Threshold to P-value map	JUND.H12CORE.1.SM.B.thr
Motif in other formats
JASPAR format	JUND.H12CORE.1.SM.B_jaspar_format.txt
MEME format	JUND.H12CORE.1.SM.B_meme_format.meme
Transfac format	JUND.H12CORE.1.SM.B_transfac_format.txt
Homer format	JUND.H12CORE.1.SM.B_homer_format_0.001.txt JUND.H12CORE.1.SM.B_homer_format_0.0005.txt JUND.H12CORE.1.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1617.5	464.5	896.5	868.5
02	397.5	639.5	209.5	2600.5
03	867.0	50.0	2767.0	163.0
04	1556.0	2291.0	0.0	0.0
05	16.0	553.0	3278.0	0.0
06	0.0	0.0	0.0	3847.0
07	106.0	3187.0	0.0	554.0
08	3767.0	80.0	0.0	0.0
09	34.0	1258.0	57.0	2498.0
10	391.25	1805.25	1050.25	600.25
11	932.75	1241.75	819.75	852.75

PFM

	A	C	G	T
01	0.42	0.121	0.233	0.226
02	0.103	0.166	0.054	0.676
03	0.225	0.013	0.719	0.042
04	0.404	0.596	0.0	0.0
05	0.004	0.144	0.852	0.0
06	0.0	0.0	0.0	1.0
07	0.028	0.828	0.0	0.144
08	0.979	0.021	0.0	0.0
09	0.009	0.327	0.015	0.649
10	0.102	0.469	0.273	0.156
11	0.242	0.323	0.213	0.222

PWM

	A	C	G	T
01	0.519	-0.726	-0.07	-0.102
02	-0.881	-0.407	-1.516	0.993
03	-0.103	-2.918	1.055	-1.765
04	0.48	0.867	-6.146	-6.146
05	-3.977	-0.552	1.225	-6.146
06	-6.146	-6.146	-6.146	1.385
07	-2.188	1.197	-6.146	-0.55
08	1.364	-2.463	-6.146	-6.146
09	-3.286	0.268	-2.792	0.953
10	-0.896	0.629	0.088	-0.47
11	-0.031	0.255	-0.159	-0.12

Standard thresholds

P-value	Threshold
0.001	4.81841
0.0005	5.81544
0.0001	7.551685