JUND.H12CORE.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUND.H12CORE.0.PM.A
Gene (human)	JUND (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jund
Gene synonyms (mouse)	Jun-d, Jund1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	nRTGAGTCAYh
GC content	43.86%
Information content (bits; total / per base)	14.998 / 1.363
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	25 (163)	0.874	0.989	0.848	0.979	0.866	0.99	3.945	6.182	293.854	681.509
Mouse	28 (176)	0.908	0.979	0.862	0.962	0.899	0.981	3.821	5.222	289.435	651.77

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.839	0.816	0.696	0.693	0.61	0.62
Overall, 2 experiments	best	0.858	0.829	0.709	0.704	0.618	0.627
Methyl HT-SELEX, 1 experiments	median	0.82	0.804	0.682	0.682	0.602	0.613
Methyl HT-SELEX, 1 experiments	best	0.82	0.804	0.682	0.682	0.602	0.613
Non-Methyl HT-SELEX, 1 experiments	median	0.858	0.829	0.709	0.704	0.618	0.627
Non-Methyl HT-SELEX, 1 experiments	best	0.858	0.829	0.709	0.704	0.618	0.627

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	401.879	74.149	0.294	0.445

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.494	0.097	0.444	0.197

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.3
HGNC	HGNC:6206
MGI	MGI:96648
EntrezGene (human)	GeneID:3727 (SSTAR profile)
EntrezGene (mouse)	GeneID:16478 (SSTAR profile)
UniProt ID (human)	JUND_HUMAN
UniProt ID (mouse)	JUND_MOUSE
UniProt AC (human)	P17535 (TFClass)
UniProt AC (mouse)	P15066 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	25 human, 28 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	JUND.H12CORE.0.PM.A.pcm
PWM	JUND.H12CORE.0.PM.A.pwm
PFM	JUND.H12CORE.0.PM.A.pfm
Alignment	JUND.H12CORE.0.PM.A.words.tsv
Threshold to P-value map	JUND.H12CORE.0.PM.A.thr
Motif in other formats
JASPAR format	JUND.H12CORE.0.PM.A_jaspar_format.txt
MEME format	JUND.H12CORE.0.PM.A_meme_format.meme
Transfac format	JUND.H12CORE.0.PM.A_transfac_format.txt
Homer format	JUND.H12CORE.0.PM.A_homer_format_0.001.txt JUND.H12CORE.0.PM.A_homer_format_0.0005.txt JUND.H12CORE.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	227.0	167.0	368.0	238.0
02	577.0	123.0	292.0	8.0
03	1.0	0.0	2.0	997.0
04	0.0	0.0	974.0	26.0
05	997.0	1.0	1.0	1.0
06	32.0	0.0	968.0	0.0
07	0.0	0.0	1.0	999.0
08	1.0	997.0	1.0	1.0
09	997.0	2.0	0.0	1.0
10	3.0	320.0	61.0	616.0
11	256.0	395.0	152.0	197.0

PFM

	A	C	G	T
01	0.227	0.167	0.368	0.238
02	0.577	0.123	0.292	0.008
03	0.001	0.0	0.002	0.997
04	0.0	0.0	0.974	0.026
05	0.997	0.001	0.001	0.001
06	0.032	0.0	0.968	0.0
07	0.0	0.0	0.001	0.999
08	0.001	0.997	0.001	0.001
09	0.997	0.002	0.0	0.001
10	0.003	0.32	0.061	0.616
11	0.256	0.395	0.152	0.197

PWM

	A	C	G	T
01	-0.096	-0.4	0.384	-0.049
02	0.832	-0.702	0.154	-3.253
03	-4.525	-4.982	-4.213	1.378
04	-4.982	-4.982	1.355	-2.206
05	1.378	-4.525	-4.525	-4.525
06	-2.01	-4.982	1.349	-4.982
07	-4.982	-4.982	-4.525	1.38
08	-4.525	1.378	-4.525	-4.525
09	1.378	-4.213	-4.982	-4.525
10	-3.975	0.245	-1.39	0.898
11	0.024	0.455	-0.493	-0.236

Standard thresholds

P-value	Threshold
0.001	1.392665
0.0005	3.35164
0.0001	5.790465